Strain identifier
BacDive ID: 17072
Type strain: 
Species: Kosmotoga arenicorallina
Strain Designation: S304
Strain history: T. Nunoura S304.
NCBI tax ID(s): 1453497 (strain), 688066 (species)
version 8.1 (current version)
General
@ref: 16389
BacDive-ID: 17072
DSM-Number: 22549
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Kosmotoga arenicorallina S304 is an anaerobe, thermophilic bacterium that was isolated from hydrothermally influenced sediment composed of tiny coral granules.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1453497 | strain |
| 688066 | species |
strain history
| @ref | history |
|---|---|
| 16389 | <- T. Nunoura, Japan Agency for Marine-Earth Sci. and Technol. (JAMSTEC), Extremobiosphere Res. Center, Yokosuka; S304 <- T. Nunoura {2008} |
| 67770 | T. Nunoura S304. |
doi: 10.13145/bacdive17072.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Kosmotogales
- family: Kosmotogaceae
- genus: Kosmotoga
- species: Kosmotoga arenicorallina
- full scientific name: Kosmotoga arenicorallina Nunoura et al. 2011
@ref: 16389
domain: Bacteria
phylum: Thermotogae
class: Thermotogae
order: Thermotogales
family: Kosmotogaceae
genus: Kosmotoga
species: Kosmotoga arenicorallina
full scientific name: Kosmotoga arenicorallina Nunoura et al. 2011
strain designation: S304
type strain: yes
Morphology
colony morphology
- @ref: 16389
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 16389
- name: KOSMOTOGA MEDIUM (DSMZ Medium 284)
- growth: yes
- link: https://mediadive.dsmz.de/medium/284
- composition: Name: KOSMOTOGA MEDIUM (DSMZ Medium 284) Composition: MgCl2 x 6 H2O 4.05138 g/l Na2CO3 1.48221 g/l Yeast extract 0.988142 g/l Na2S x 9 H2O 0.494071 g/l L-Cysteine HCl x H2O 0.494071 g/l KCl 0.326087 g/l NH4Cl 0.247036 g/l K2HPO4 0.13834 g/l MgSO4 x 7 H2O 0.0296443 g/l Nitrilotriacetic acid 0.0148221 g/l NaCl 0.00988142 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00988142 g/l MnSO4 x H2O 0.00494071 g/l ZnSO4 x 7 H2O 0.00177866 g/l CoSO4 x 7 H2O 0.00177866 g/l CaCl2 x 2 H2O 0.000988142 g/l FeSO4 x 7 H2O 0.000988142 g/l Sodium resazurin 0.000494071 g/l NiCl2 x 6 H2O 0.000296443 g/l AlK(SO4)2 x 12 H2O 0.000197628 g/l Na2MoO4 x 2 H2O 9.88142e-05 g/l CuSO4 x 5 H2O 9.88142e-05 g/l H3BO3 9.88142e-05 g/l Pyridoxine hydrochloride 9.88142e-05 g/l (DL)-alpha-Lipoic acid 4.94071e-05 g/l p-Aminobenzoic acid 4.94071e-05 g/l Thiamine HCl 4.94071e-05 g/l Riboflavin 4.94071e-05 g/l Nicotinic acid 4.94071e-05 g/l Calcium D-(+)-pantothenate 4.94071e-05 g/l Folic acid 1.97628e-05 g/l Biotin 1.97628e-05 g/l Na2WO4 x 2 H2O 3.95257e-06 g/l Na2SeO3 x 5 H2O 2.96443e-06 g/l Vitamin B12 9.88142e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16389 | positive | growth | 55 | thermophilic |
| 67770 | positive | growth | 55 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 16389
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 16389 | hydrothermally influenced sediment composed of tiny coral granules | southern part of the Yaeyama Archipelago, Taketomi | Japan | JPN | Asia | 24.3358 | 124.103 |
| 67770 | Taketomi submarine hot spring shallow hydrothermal field located at southern part of the Yaeyama Archipelago | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Host | #Invertebrates (Other) | #Cnidaria (Corals) |
Safety information
risk assessment
- @ref: 16389
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 16389 | Kosmotoga arenicorallina gene for 16S rRNA, partial sequence, type 1 | AB530678 | 1451 | ena | 1453497 |
| 16389 | Kosmotoga arenicorallina gene for 16S rRNA, partial sequence, type 2 | AB530679 | 1451 | ena | 1453497 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kosmotoga arenicorallina S304 | GCA_001636545 | contig | ncbi | 1453497 |
| 66792 | Kosmotoga arenicorallina S304 | 1453497.3 | wgs | patric | 1453497 |
| 66792 | Kosmotoga arenicorallina S304 | 2811995046 | complete | img | 1453497 |
GC content
- @ref: 16389
- GC-content: 40.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 16389
culture collection no.: DSM 22549, JCM 15790, NBRC 109616
straininfo link
- @ref: 86072
- straininfo: 407040
literature
- topic: Phylogeny
- Pubmed-ID: 20694719
- title: Kosmotoga arenicorallina sp. nov. a thermophilic and obligately anaerobic heterotroph isolated from a shallow hydrothermal system occurring within a coral reef, southern part of the Yaeyama Archipelago, Japan, reclassification of Thermococcoides shengliensis as Kosmotoga shengliensis comb. nov., and emended description of the genus Kosmotoga.
- authors: Nunoura T, Hirai M, Imachi H, Miyazaki M, Makita H, Hirayama H, Furushima Y, Yamamoto H, Takai K
- journal: Arch Microbiol
- DOI: 10.1007/s00203-010-0611-7
- year: 2010
- mesh: Bacteria, Anaerobic/classification/growth & development/*isolation & purification, Bacterial Typing Techniques, Base Composition, *Coral Reefs, Culture Media, DNA, Bacterial/genetics, Genes, Bacterial, Hot Temperature, Japan, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Species Specificity, Sulfur-Reducing Bacteria/classification/growth & development/*isolation & purification, *Water Microbiology
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16389 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22549) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22549 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 86072 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407040.1 | StrainInfo: A central database for resolving microbial strain identifiers |