Strain identifier
BacDive ID: 17043
Type strain: 
Species: Marinitoga okinawensis
Strain Designation: TFS10-5
Strain history: T. Nunoura TFS10-5.
NCBI tax ID(s): 389480 (species)
version 8.1 (current version)
General
@ref: 6841
BacDive-ID: 17043
DSM-Number: 17373
keywords: 16S sequence, Bacteria, anaerobe, thermophilic, motile, rod-shaped
description: Marinitoga okinawensis TFS10-5 is an anaerobe, thermophilic, motile bacterium that was isolated from hydrothermal vent chimney.
NCBI tax id
- NCBI tax id: 389480
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6841 | <- T. Nunoura, Subground Animalcule Retrieval (SUGAR) Program, Japan Agency for Marine-Earth Science and Technology (JAMSTEC); TFS10-5 <- T. Nunoura {2004} |
| 67770 | T. Nunoura TFS10-5. |
doi: 10.13145/bacdive17043.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Petrotogales
- family: Petrotogaceae
- genus: Marinitoga
- species: Marinitoga okinawensis
- full scientific name: Marinitoga okinawensis Nunoura et al. 2007
@ref: 6841
domain: Bacteria
phylum: Thermotogae
class: Thermotogae
order: Thermotogales
family: Petrotogaceae
genus: Marinitoga
species: Marinitoga okinawensis
full scientific name: Marinitoga okinawensis Nunoura et al. 2007
strain designation: TFS10-5
type strain: yes
Morphology
cell morphology
- @ref: 31912
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 6841
- name: MARINITOGA PIEZOPHILA MEDIUM (DSMZ Medium 945)
- growth: yes
- link: https://mediadive.dsmz.de/medium/945
- composition: Name: MARINITOGA PIEZOPHILA MEDIUM (DSMZ Medium 945) Composition: NaCl 30.0 g/l Sulfur 10.0 g/l Trypticase peptone 5.0 g/l Yeast extract 5.0 g/l MES 1.95 g/l NH4Cl 1.0 g/l Na-acetate 0.83 g/l Na2S x 9 H2O 0.3 g/l L-Cysteine HCl x H2O 0.3 g/l K2HPO4 0.3 g/l KH2PO4 0.3 g/l MgCl2 x 6 H2O 0.2 g/l CaCl2 x 2 H2O 0.1 g/l KCl 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6841 | positive | growth | 55 | thermophilic |
| 31912 | positive | growth | 30-70 | |
| 31912 | positive | optimum | 57.5 | thermophilic |
| 67770 | positive | growth | 55 | thermophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31912 | positive | growth | 5.0-7.4 |
| 31912 | positive | optimum | 5.64 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 6841 | anaerobe |
| 31912 | anaerobe |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31912 | NaCl | positive | growth | 1.0-5.5 % |
| 31912 | NaCl | positive | optimum | 3.25 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31912 | 17234 | glucose | + | carbon source |
| 31912 | 17754 | glycerol | + | carbon source |
metabolite production
- @ref: 31912
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 6841 | hydrothermal vent chimney | Pacific Ocean, Yonaguni Knoll IV, Southern Okinawa Trough | Japan | JPN | Asia | 24.849 | 122.7 |
| 67770 | Deep-sea hydrothermal field in Yonaguni Knoll IV | Southern Okinawa Trough |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_114278.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_410;96_2804;97_58314;98_77364;99_114278&stattab=map
- Last taxonomy: Marinitoga okinawensis subclade
- 16S sequence: AB262395
- Sequence Identity:
- Total samples: 20
- soil counts: 1
- aquatic counts: 18
- animal counts: 1
Safety information
risk assessment
- @ref: 6841
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6841
- description: Marinitoga okinawensis gene for 16S rRNA, partial sequence
- accession: AB262395
- length: 1476
- database: ena
- NCBI tax ID: 389480
GC content
| @ref | GC-content | method |
|---|---|---|
| 6841 | 28 | high performance liquid chromatography (HPLC) |
| 31912 | 28 |
External links
@ref: 6841
culture collection no.: DSM 17373, JCM 13303
straininfo link
- @ref: 86043
- straininfo: 293984
literature
- topic: Phylogeny
- Pubmed-ID: 17329770
- title: Marinitoga okinawensis sp. nov., a novel thermophilic and anaerobic heterotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough.
- authors: Nunoura T, Oida H, Miyazaki M, Suzuki Y, Takai K, Horikoshi K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64640-0
- year: 2007
- mesh: Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics/isolation & purification/metabolism, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification/metabolism, Temperature
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 6841 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17373) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17373 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 31912 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28169 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86043 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID293984.1 | StrainInfo: A central database for resolving microbial strain identifiers |