Strain identifier
BacDive ID: 17041
Type strain: 
Species: Marinitoga piezophila
Strain Designation: KA3
Strain history: J.-L. Birrien KA3.
NCBI tax ID(s): 149715 (species)
version 8.1 (current version)
General
@ref: 5299
BacDive-ID: 17041
DSM-Number: 14283
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Marinitoga piezophila KA3 is an anaerobe, thermophilic bacterium that was isolated from deep-sea hydrothermal chimney.
NCBI tax id
- NCBI tax id: 149715
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5299 | <- J.-L. Birrien, Centre National de la Recherche Scientifique, and Université de Bretagne Occidentale, Institut Universitaire Européen de la Mer, Plouzané, France; KA3 <- K. Alain {1999} |
| 67770 | J.-L. Birrien KA3. |
doi: 10.13145/bacdive17041.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Petrotogales
- family: Petrotogaceae
- genus: Marinitoga
- species: Marinitoga piezophila
- full scientific name: Marinitoga piezophila Alain et al. 2002
@ref: 5299
domain: Bacteria
phylum: Thermotogae
class: Thermotogae
order: Thermotogales
family: Petrotogaceae
genus: Marinitoga
species: Marinitoga piezophila
full scientific name: Marinitoga piezophila Alain et al. 2002
strain designation: KA3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5299
- name: MARINITOGA PIEZOPHILA MEDIUM (DSMZ Medium 945)
- growth: yes
- link: https://mediadive.dsmz.de/medium/945
- composition: Name: MARINITOGA PIEZOPHILA MEDIUM (DSMZ Medium 945) Composition: NaCl 30.0 g/l Sulfur 10.0 g/l Trypticase peptone 5.0 g/l Yeast extract 5.0 g/l MES 1.95 g/l NH4Cl 1.0 g/l Na-acetate 0.83 g/l Na2S x 9 H2O 0.3 g/l L-Cysteine HCl x H2O 0.3 g/l K2HPO4 0.3 g/l KH2PO4 0.3 g/l MgCl2 x 6 H2O 0.2 g/l CaCl2 x 2 H2O 0.1 g/l KCl 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5299 | positive | growth | 65 | thermophilic |
| 67770 | positive | growth | 65 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 5299
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | latitude | longitude |
|---|---|---|---|---|
| 5299 | deep-sea hydrothermal chimney | East-Pacific Rise, Grandbonum hydrothermal vent site | 12.8 | -103.933 |
| 67770 | Hydrothermal vent chimney, the East-Pacific Ridge (13° N), at a depth of 2,630 m |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_3541.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_410;96_1843;97_2212;98_2715;99_3541&stattab=map
- Last taxonomy: Marinitoga piezophila subclade
- 16S sequence: AF326121
- Sequence Identity:
- Total samples: 23
- aquatic counts: 17
- animal counts: 6
Safety information
risk assessment
- @ref: 5299
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5299
- description: Thermotogales str. KA3 16S ribosomal RNA gene, partial sequence
- accession: AF326121
- length: 1443
- database: ena
- NCBI tax ID: 443254
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinitoga piezophila KA3 | GCA_000255135 | complete | ncbi | 443254 |
| 66792 | Marinitoga piezophila KA3 | 443254.7 | complete | patric | 443254 |
| 66792 | Marinitoga piezophila KA3 | 443254.13 | plasmid | patric | 443254 |
| 66792 | Marinitoga piezophila KA3 | 2508501120 | complete | img | 443254 |
| 67770 | Marinitoga piezophila KA3, complete genome | CP003257 | ncbi | 443254 |
GC content
- @ref: 5299
- GC-content: 29
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.221 | no |
| flagellated | no | 89.318 | no |
| gram-positive | no | 93.843 | no |
| anaerobic | yes | 99.601 | yes |
| aerobic | no | 98.911 | no |
| halophile | no | 90.475 | no |
| spore-forming | no | 91.48 | no |
| glucose-util | yes | 84.003 | no |
| thermophile | yes | 100 | yes |
| glucose-ferment | yes | 56.602 | no |
External links
@ref: 5299
culture collection no.: DSM 14283, JCM 11233
straininfo link
- @ref: 86041
- straininfo: 100739
literature
- topic: Phylogeny
- Pubmed-ID: 12148648
- title: Marinitoga piezophila sp. nov., a rod-shaped, thermo-piezophilic bacterium isolated under high hydrostatic pressure from a deep-sea hydrothermal vent.
- authors: Alain K, Marteinsson VT, Miroshnichenko ML, Bonch-Osmolovskaya EA, Prieur D, Birrien JL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-4-1331
- year: 2002
- mesh: Culture Media, DNA, Ribosomal/analysis, Genes, rRNA, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/growth & development/*isolation & purification/physiology, *Hot Temperature, *Hydrostatic Pressure, Microscopy, Electron, Scanning, Molecular Sequence Data, Pacific Ocean, Phylogeny, RNA, Ribosomal, 16S, Seawater/*microbiology, Sequence Analysis, DNA
- topic2: Cultivation
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5299 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14283) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14283 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 86041 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100739.1 | StrainInfo: A central database for resolving microbial strain identifiers |