Strain identifier
BacDive ID: 17027
Type strain: 
Species: Pyrobaculum oguniense
Strain Designation: TE7
Strain history: Y. Sako TE7.
NCBI tax ID(s): 698757 (strain), 99007 (species)
version 8.1 (current version)
General
@ref: 5018
BacDive-ID: 17027
DSM-Number: 13380
keywords: genome sequence, 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Pyrobaculum oguniense TE7 is an anaerobe, hyperthermophilic archaeon that was isolated from hot spring effluent water sample.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 99007 | species |
| 698757 | strain |
strain history
| @ref | history |
|---|---|
| 5018 | <- T. Nunoura, Kyoto Univ., Japan; TE7 <- T. Nunoura and Y. Sako {1998} |
| 67770 | Y. Sako TE7. |
doi: 10.13145/bacdive17027.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Thermoproteales
- family: Thermoproteaceae
- genus: Pyrobaculum
- species: Pyrobaculum oguniense
- full scientific name: Pyrobaculum oguniense Sako et al. 2001
@ref: 5018
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Thermoproteales
family: Thermoproteaceae
genus: Pyrobaculum
species: Pyrobaculum oguniense
full scientific name: Pyrobaculum oguniense Sako et al. 2001
strain designation: TE7
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5018
- name: PYROBACULUM MEDIUM (DSMZ Medium 390)
- growth: yes
- link: https://mediadive.dsmz.de/medium/390
- composition: Name: PYROBACULUM MEDIUM (DSMZ Medium 390; with strain-specific modifications) Composition: (NH4)2SO4 1.28713 g/l Yeast extract 0.990099 g/l Na2S2O3 x 5 H2O 0.990099 g/l Na2S x 9 H2O 0.49505 g/l KH2PO4 0.277228 g/l MgSO4 x 7 H2O 0.247525 g/l CaCl2 x 2 H2O 0.0693069 g/l FeCl3 x 6 H2O 0.019802 g/l Na2B4O7 x 10 H2O 0.00445545 g/l MnCl2 x 4 H2O 0.00178218 g/l Sodium resazurin 0.00049505 g/l ZnSO4 x 7 H2O 0.000217822 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Na2MoO4 x 2 H2O 2.9703e-05 g/l VOSO4 x 2 H2O 2.9703e-05 g/l CoSO4 x 7 H2O 9.90099e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5018 | positive | growth | 90 | hyperthermophilic |
| 67770 | positive | growth | 90 | hyperthermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 5018
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5018 | hot spring effluent water sample | Kumamoto prefecture, Tuetate Hot Spring | Japan | JPN | Asia |
| 67770 | Terrestrial hot spring at Oguni-cho | Kumamoto | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_187166.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17852;96_68834;97_89478;98_121757;99_187166&stattab=map
- Last taxonomy: Pyrobaculum oguniense subclade
- 16S sequence: AB029339
- Sequence Identity:
- Total samples: 3
- aquatic counts: 3
Safety information
risk assessment
- @ref: 5018
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5018
- description: Pyrobaculum oguniense gene for 16S ribosomal RNA, partial sequence
- accession: AB029339
- length: 1472
- database: ena
- NCBI tax ID: 698757
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pyrobaculum oguniense TE7 | GCA_000247545 | complete | ncbi | 698757 |
| 66792 | Pyrobaculum oguniense TE7, DSM 13380 | 2512047039 | complete | img | 698757 |
| 66792 | Pyrobaculum oguniense TE7 | 698757.20 | plasmid | patric | 698757 |
| 66792 | Pyrobaculum oguniense TE7 | 698757.19 | complete | patric | 698757 |
GC content
- @ref: 5018
- GC-content: 48
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 76.915 | no |
| flagellated | no | 96.402 | no |
| gram-positive | no | 97.51 | no |
| anaerobic | yes | 96.851 | no |
| aerobic | no | 90.608 | no |
| halophile | no | 81.331 | no |
| spore-forming | no | 95.939 | no |
| glucose-util | yes | 75.978 | no |
| thermophile | yes | 100 | yes |
| glucose-ferment | no | 78.249 | no |
External links
@ref: 5018
culture collection no.: DSM 13380, JCM 10595
straininfo link
- @ref: 86028
- straininfo: 49461
literature
- topic: Phylogeny
- Pubmed-ID: 11321074
- title: Pyrobaculum oguniense sp. nov., a novel facultatively aerobic and hyperthermophilic archaeon growing at up to 97 degrees C.
- authors: Sako Y, Nunoura T, Uchida A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-51-2-303
- year: 2001
- mesh: Aerobiosis, Anaerobiosis, DNA, Ribosomal/genetics, Drug Resistance, Microbial, *Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Salts, Terminology as Topic, Thermoproteaceae/*classification/*growth & development/isolation & purification/ultrastructure, *Water Microbiology
- topic2: Stress
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5018 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13380) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13380 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 86028 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49461.1 | StrainInfo: A central database for resolving microbial strain identifiers |