Strain identifier

BacDive ID: 17007

Type strain: Yes

Species: Actinoallomurus amamiensis

Strain Designation: TT00-28

Strain history: <- T Tamura, NBRC, Japan

NCBI tax ID(s): 478109 (species)

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General

@ref: 16834

BacDive-ID: 17007

DSM-Number: 45447

keywords: 16S sequence, Bacteria, aerobe, spore-forming, rod-shaped

description: Actinoallomurus amamiensis TT00-28 is an aerobe, spore-forming, rod-shaped bacterium that was isolated from grove soil, Citrus tankan.

NCBI tax id

  • NCBI tax id: 478109
  • Matching level: species

strain history

@refhistory
16834<- NBRC; NBRC 103682 <- T. Tamura; TT00-28
67771<- T Tamura, NBRC, Japan

doi: 10.13145/bacdive17007.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinoallomurus
  • species: Actinoallomurus amamiensis
  • full scientific name: Actinoallomurus amamiensis Tamura et al. 2009

@ref: 16834

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinoallomurus

species: Actinoallomurus amamiensis

full scientific name: Actinoallomurus amamiensis Tamura et al. 2009

strain designation: TT00-28

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapemotilitygram stain
291271.1 µm0.75 µmrod-shapedno
67771positive

pigmentation

  • @ref: 29127
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16834GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
16834ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
16834positivegrowth28
29127positivegrowth20-37
29127positiveoptimum28.5
67771positivegrowth28

culture pH

@refabilitytypepH
29127positivegrowth05-06
29127positiveoptimum5.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29127aerobe
67771aerobe

spore formation

  • @ref: 29127
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29127NaClpositivegrowth0-2 %
29127NaClpositiveoptimum1 %

observation

  • @ref: 29127
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29127168082-dehydro-D-gluconate+carbon source
29127581435-dehydro-D-gluconate+carbon source
2912715963ribitol+carbon source
2912722599arabinose+carbon source
2912718403L-arabitol+carbon source
2912717057cellobiose+carbon source
2912728757fructose+carbon source
2912733984fucose+carbon source
2912728260galactose+carbon source
291275417glucosamine+carbon source
2912717234glucose+carbon source
2912717754glycerol+carbon source
2912728087glycogen+carbon source
2912717716lactose+carbon source
2912725017leucine+carbon source
2912717306maltose+carbon source
2912729864mannitol+carbon source
2912737684mannose+carbon source
2912728053melibiose+carbon source
2912717268myo-inositol+carbon source
29127506227N-acetylglucosamine+carbon source
2912716634raffinose+carbon source
2912726546rhamnose+carbon source
2912733942ribose+carbon source
2912717814salicin+carbon source
2912730911sorbitol+carbon source
2912717992sucrose+carbon source
2912727082trehalose+carbon source
2912717151xylitol+carbon source
2912718222xylose+carbon source
291274853esculin+hydrolysis

enzymes

@refvalueactivityec
29127acid phosphatase+3.1.3.2
29127catalase+1.11.1.6
29127gelatinase+
29127pyrazinamidase+3.5.1.B15

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16834grove soil, Citrus tankanAmami Island, KagoshimaJapanJPNAsia
67771From grove soilAmami Island, KagoshimaJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 16834
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16834
  • description: Actinoallomurus amamiensis gene for 16S rRNA, partial sequence, strain: TT00-28 (= NBRC 103682)
  • accession: AB364583
  • length: 1471
  • database: nuccore
  • NCBI tax ID: 478109

GC content

  • @ref: 16834
  • GC-content: 72

External links

@ref: 16834

culture collection no.: DSM 45447, KCTC 19537, NBRC 103682

straininfo link

  • @ref: 86008
  • straininfo: 398090

literature

  • topic: Phylogeny
  • Pubmed-ID: 19567582
  • title: Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.
  • authors: Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.006858-0
  • year: 2009
  • mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16834Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45447)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45447
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29127Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2555328776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
86008Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398090.1StrainInfo: A central database for resolving microbial strain identifiers