Strain identifier

BacDive ID: 17007

Type strain: Yes

Species: Actinoallomurus amamiensis

Strain Designation: TT00-28

Culture col. no.: DSM 45447, KCTC 19537, NBRC 103682

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General

@ref: 16834

BacDive-ID: 17007

DSM-Number: 45447

keywords: spore-forming, aerobe, Bacteria, 16S sequence, mesophilic, rod-shaped

description: Actinoallomurus amamiensis TT00-28 is an aerobe, spore-forming, mesophilic bacterium that was isolated from grove soil, Citrus tankan.

strain history: <- NBRC; NBRC 103682 <- T. Tamura; TT00-28

doi: 10.13145/bacdive17007.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinoallomurus
  • species: Actinoallomurus amamiensis
  • full scientific name: Actinoallomurus amamiensis Tamura et al. 2009

@ref: 16834

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinoallomurus

species: Actinoallomurus amamiensis

full scientific name: Actinoallomurus amamiensis Tamura et al. 2009

strain designation: TT00-28

type strain: yes

Morphology

cell morphology

  • @ref: 29127
  • cell length: 1.1 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29127
  • production: no

Culture and growth conditions

culture medium

  • @ref: 16834
  • name: GPHF-MEDIUM (DSMZ Medium 553)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf

culture temp

@refgrowthtypetemperaturerange
16834positivegrowth28mesophilic
29127positivegrowth20-37
29127positiveoptimum28.5mesophilic

culture pH

@refabilitytypepH
29127positivegrowth05-06
29127positiveoptimum5.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29127
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29127
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29127NaClpositivegrowth0-2 %
29127NaClpositiveoptimum1 %

observation

  • @ref: 29127
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29127168082-dehydro-D-gluconate+carbon source
29127581435-dehydro-D-gluconate+carbon source
2912715963ribitol+carbon source
2912722599arabinose+carbon source
2912718403L-arabitol+carbon source
2912717057cellobiose+carbon source
2912728757fructose+carbon source
2912733984fucose+carbon source
2912728260galactose+carbon source
291275417glucosamine+carbon source
2912717234glucose+carbon source
2912717754glycerol+carbon source
2912728087glycogen+carbon source
2912717716lactose+carbon source
2912725017leucine+carbon source
2912717306maltose+carbon source
2912729864mannitol+carbon source
2912737684mannose+carbon source
2912728053melibiose+carbon source
2912717268myo-inositol+carbon source
29127506227N-acetylglucosamine+carbon source
2912716634raffinose+carbon source
2912726546rhamnose+carbon source
2912733942ribose+carbon source
2912717814salicin+carbon source
2912730911sorbitol+carbon source
2912717992sucrose+carbon source
2912727082trehalose+carbon source
2912717151xylitol+carbon source
2912718222xylose+carbon source
291274853esculin+hydrolysis

enzymes

@refvalueactivityec
29127acid phosphatase+3.1.3.2
29127catalase+1.11.1.6
29127gelatinase+
29127pyrazinamidase+3.5.1.B15

Isolation, sampling and environmental information

isolation

  • @ref: 16834
  • sample type: grove soil, Citrus tankan
  • geographic location: Amami Island, Kagoshima
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 16834
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16834
  • description: Actinoallomurus amamiensis gene for 16S rRNA, partial sequence, strain: TT00-28 (= NBRC 103682)
  • accession: AB364583
  • length: 1471
  • database: ena
  • NCBI tax ID: 478109

GC content

  • @ref: 16834
  • GC-content: 72

External links

@ref: 16834

culture collection no.: DSM 45447, KCTC 19537, NBRC 103682

straininfo link

@refpassport
20218http://www.straininfo.net/strains/844398
20218http://www.straininfo.net/strains/844399

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16834Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45447)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45447
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2555310.1099/ijs.0.006858-0
29127Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information25553