Strain identifier

BacDive ID: 169759

Type strain: No

Species: Streptococcus caecimuris

Strain Designation: CLA-AV-18

Strain history: <- T. Clavel, RWTH Aachen; Cla-AV-18

NCBI tax ID(s): 2941338 (species)

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General

@ref: 69178

BacDive-ID: 169759

DSM-Number: 110150

keywords: genome sequence, Bacteria, Gram-positive

description: Streptococcus caecimuris CLA-AV-18 is a Gram-positive bacterium that was isolated from caecal content; SPF, female, 10-week-old, C57BL/6J mouse.

NCBI tax id

  • NCBI tax id: 2941338
  • Matching level: species

strain history

  • @ref: 69178
  • history: <- T. Clavel, RWTH Aachen; Cla-AV-18

doi: 10.13145/bacdive169759.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus caecimuris
  • full scientific name: Streptococcus caecimuris Afrizal et al. 2022

@ref: 69178

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus caecimuris

full scientific name: Streptococcus caecimuris

strain designation: CLA-AV-18

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 91.5

Culture and growth conditions

culture medium

@refnamegrowthlink
69178BHI MEDIUM (DSMZ Medium 215)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf
69178COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

  • @ref: 69178
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
69178-+++-++/---+++----++--++-++++-+

Isolation, sampling and environmental information

isolation

  • @ref: 69178
  • sample type: caecal content; SPF, female, 10-week-old, C57BL/6J mouse
  • geographic location: Aachen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

Safety information

risk assessment

  • @ref: 69178
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Streptococcus caecimuris DSM 110150
  • accession: GCA_943193075
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2941338

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no97.554no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes87.497no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no90.983no
69480spore-formingspore-formingAbility to form endo- or exosporesno84.603no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.778yes
69480flagellatedmotile2+Ability to perform flagellated movementno91.5no

External links

@ref: 69178

culture collection no.: DSM 110150

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69178Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110150Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110150)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes