Strain identifier

BacDive ID: 169749

Type strain: No

Species: Flintibacter muris

Strain Designation: Cla-AV-17

Strain history: <- T. Clavel, RWTH Aachen; Cla-AV-17

NCBI tax ID(s): 2941327 (species)

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General

@ref: 69168

BacDive-ID: 169749

DSM-Number: 110149

keywords: genome sequence, Bacteria, anaerobe

description: Flintibacter muris Cla-AV-17 is an anaerobe bacterium that was isolated from caecal content; SPF, female, 10-week-old, C57BL/6J mouse.

NCBI tax id

  • NCBI tax id: 2941327
  • Matching level: species

strain history

  • @ref: 69168
  • history: <- T. Clavel, RWTH Aachen; Cla-AV-17

doi: 10.13145/bacdive169749.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Gammaproteobacteria, not assigned to order
  • family: Gammaproteobacteria, not assigned to family
  • genus: Flintibacter
  • species: Flintibacter muris
  • full scientific name: Flintibacter muris Afrizal et al. 2022

@ref: 69168

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Gammaproteobacteria, not assigned to order

family: Gammaproteobacteria, not assigned to family

genus: Flintibacter

species: Flintibacter muris

full scientific name: Flintibacter muris

strain designation: Cla-AV-17

type strain: no

Culture and growth conditions

culture medium

  • @ref: 69168
  • name: BHI MEDIUM (DSMZ Medium 215)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf

culture temp

  • @ref: 69168
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380proline-arylamidase+3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
69168-+/--+-+--+/-+----+--+/-++/-----++--+/-

Isolation, sampling and environmental information

isolation

  • @ref: 69168
  • sample type: caecal content; SPF, female, 10-week-old, C57BL/6J mouse
  • geographic location: Aachen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

Sequence information

Genome sequences

  • @ref: 66792
  • description: Flintibacter muris DSM 110149
  • accession: GCA_943192995
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2941327

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no93.663no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes56.498no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes77.448no
69480spore-formingspore-formingAbility to form endo- or exosporesno59.438no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno89.342no
69480flagellatedmotile2+Ability to perform flagellated movementyes65.637no

External links

@ref: 69168

culture collection no.: DSM 110149

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69168Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110149Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110149)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes