Strain identifier
BacDive ID: 169730
Type strain: 
Species: Serpentinimonas raichei
Strain Designation: A1
Strain history: <- L. Bird, Univ. of Southern California, USA; A1 <- G. J. Kuenen, University of Delft and S. Suzuki, University of Southern California
NCBI tax ID(s): 1458425 (species)
version 9.1 (current version)
General
@ref: 69149
BacDive-ID: 169730
DSM-Number: 103917
keywords: genome sequence, Bacteria, Gram-negative
description: Serpentinimonas raichei A1 is a Gram-negative bacterium that was isolated from highly alkaline spring.
NCBI tax id
- NCBI tax id: 1458425
- Matching level: species
strain history
- @ref: 69149
- history: <- L. Bird, Univ. of Southern California, USA; A1 <- G. J. Kuenen, University of Delft and S. Suzuki, University of Southern California
doi: 10.13145/bacdive169730.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Serpentinimonas
- species: Serpentinimonas raichei
- full scientific name: Serpentinimonas raichei Bird et al. 2021
@ref: 69149
domain: Bacteria
phylum: Pseudomonadota
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Serpentinimonas
species: Serpentinimonas raichei
full scientific name: Serpentinimonas raichei Bird et al. 2021
strain designation: A1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.5
Culture and growth conditions
culture medium
- @ref: 69149
- name: SERPENTINOMONAS MINIMAL MEDIUM (DSMZ Medium 1634)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1634.pdf
culture temp
- @ref: 69149
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 69149
- sample type: highly alkaline spring
- geographic location: CA, Sonoma County, The Cedars, Barnes Springs
- country: USA
- origin.country: USA
- continent: North America
- latitude: 38.6214
- longitude: -123.133
Sequence information
Genome sequences
- @ref: 66792
- description: Serpentinimonas raichei A1
- accession: GCA_000828895
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1458425
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.073 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 65.182 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.352 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 86.543 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 76.308 | no |
External links
@ref: 69149
culture collection no.: DSM 103917, NBRC 111848
straininfo link
- @ref: 115898
- straininfo: 404185
literature
- topic: Phylogeny
- Pubmed-ID: 34379584
- title: Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs.
- authors: Bird LJ, Kuenen JG, Osburn MR, Tomioka N, Ishii S, Barr C, Nealson KH, Suzuki S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004945
- year: 2021
- mesh: Bacterial Typing Techniques, Base Composition, *Comamonadaceae/classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69149 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103917 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103917) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115898 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404185.1 |