Strain identifier
BacDive ID: 169725
Type strain: 
Species: Onobrychidicola muellerharveyae
Strain Designation: TH2
Strain history: <- S. Ashrafi, Julius Kühn Institut für Pflanzenschutz, Dossenheim, Germany; TH2 <-
NCBI tax ID(s): 2825854 (species)
General
@ref: 69143
BacDive-ID: 169725
DSM-Number: 109848
keywords: 16S sequence, Bacteria
description: Onobrychidicola muellerharveyae TH2 is a bacterium that was isolated from Nodules on the roots of Sainfoin .
NCBI tax id
- NCBI tax id: 2825854
- Matching level: species
strain history
- @ref: 69143
- history: <- S. Ashrafi, Julius Kühn Institut für Pflanzenschutz, Dossenheim, Germany; TH2 <-
doi: 10.13145/bacdive169725.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Onobrychidicola
- species: Onobrychidicola muellerharveyae
- full scientific name: Onobrychidicola muellerharveyae Ashrafi et al. 2023
@ref: 69143
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Onobrychidicola
species: Onobrychidicola muellerharveyae
full scientific name: Onobrychidicola muellerharveyae Ashrafi et al., 2022
strain designation: TH2
type strain: no
Culture and growth conditions
culture medium
- @ref: 69143
- name: YMA MODIFIED (DSMZ Medium 1704)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1704.pdf
culture temp
- @ref: 69143
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | + | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | + | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69143 | + | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 69143
- sample type: Nodules on the roots of Sainfoin (Onobrychis viciifolia)
- geographic location: IPK Gatersleben
- country: Germany
- origin.country: DEU
- continent: Europe
Sequence information
16S sequences
- @ref: 124043
- description: Rhizobiaceae bacterium TH2 16S ribosomal RNA gene, partial sequence.
- accession: MW915807
- length: 1211
- database: nuccore
- NCBI tax ID: 2825854
External links
@ref: 69143
culture collection no.: DSM 109848, NCCB 100790
straininfo link
- @ref: 115893
- straininfo: 402861
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 68369 | Automatically annotated from API 20NE | |||
| 69143 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-109848 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109848) | |
| 115893 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402861.1 | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |