Strain identifier

BacDive ID: 169723

Type strain: No

Species: Agrobacterium burrii

Strain Designation: Rnr

Strain history: <- N. Kuzmanovic, JKI, Braunschweig, Germany; Rnr

NCBI tax ID(s): 2815339 (species)

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General

@ref: 69141

BacDive-ID: 169723

DSM-Number: 112541

keywords: Bacteria

description: Agrobacterium burrii Rnr is a bacterium that was isolated from Crown gall tumor on Rose.

NCBI tax id

  • NCBI tax id: 2815339
  • Matching level: species

strain history

  • @ref: 69141
  • history: <- N. Kuzmanovic, JKI, Braunschweig, Germany; Rnr

doi: 10.13145/bacdive169723.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Agrobacterium
  • species: Agrobacterium burrii
  • full scientific name: Agrobacterium burrii Mafakheri et al. 2022

@ref: 69141

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Rhizobiaceae

genus: Agrobacterium

species: Agrobacterium burrii

full scientific name: Agrobacterium burrii Mafakheri et al., 2022

strain designation: Rnr

type strain: no

Culture and growth conditions

culture medium

  • @ref: 69141
  • name: BHI MEDIUM (DSMZ Medium 215)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf

culture temp

  • @ref: 69141
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69141-++/---++/--+/--+----++/-+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
69141+----+-++++++++--+--

Isolation, sampling and environmental information

isolation

  • @ref: 69141
  • sample type: Crown gall tumor on Rose
  • geographic location: Isfahan, Najafabad
  • country: Iran
  • origin.country: IRN
  • continent: Asia

External links

@ref: 69141

culture collection no.: DSM 112541, CFBP 8705

straininfo link

  • @ref: 115891
  • straininfo: 404851

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69141Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-112541Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112541)
115891Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404851.1