Strain identifier
BacDive ID: 169664
Type strain: 
Species: Sphingomonas olei
Strain Designation: NM83_B4-11
Strain history: <- W. Navarre, Toronto; NM83_B4-11
General
@ref: 69006
BacDive-ID: 169664
DSM-Number: 110168
keywords: genome sequence, Bacteria, mesophilic
description: Sphingomonas olei NM83_B4-11 is a mesophilic bacterium that was isolated from caecal/colon content; C57BL/6, IL10-/- with colitis, 9-week-old mouse.
strain history
- @ref: 69006
- history: <- W. Navarre, Toronto; NM83_B4-11
doi: 10.13145/bacdive169664.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas olei
- full scientific name: Sphingomonas olei Chaudhary and Kim 2017
@ref: 69006
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas olei
full scientific name: Sphingomonas olei Chaudhary and Kim 2017
strain designation: NM83_B4-11
type strain: no
Culture and growth conditions
culture medium
- @ref: 69006
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
culture temp
- @ref: 69006
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 69006
- sample type: caecal/colon content; C57BL/6, IL10-/- with colitis, 9-week-old mouse
- geographic location: Toronto
- country: Canada
- origin.country: CAN
- continent: North America
Sequence information
Genome sequences
- @ref: 66792
- description: Sphingomonas olei NM83_B4-11
- accession: GCA_004801655
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1886787
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 59.748 | no |
| flagellated | no | 89.725 | no |
| gram-positive | no | 96.701 | no |
| anaerobic | no | 98.953 | no |
| aerobic | yes | 94.149 | no |
| halophile | no | 92.821 | no |
| spore-forming | no | 94.663 | no |
| thermophile | no | 98.484 | no |
| glucose-util | yes | 86.735 | no |
| glucose-ferment | no | 92.29 | no |
External links
@ref: 69006
culture collection no.: DSM 110168
straininfo link
- @ref: 115840
- straininfo: 401572
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69006 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110168 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110168) | |
| 115840 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401572.1 |