Strain identifier
BacDive ID: 169659
Type strain: 
Species: Sediminibacter sp.
Strain Designation: Hel_I_10, Hel1_10
Strain history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Hel1_10
NCBI tax ID(s): 747262 (species)
version 9.1 (current version)
General
@ref: 68995
BacDive-ID: 169659
DSM-Number: 29656
keywords: genome sequence, Bacteria, Gram-negative
description: Sediminibacter sp. Hel_I_10 is a Gram-negative bacterium that was isolated from seawater sample.
NCBI tax id
- NCBI tax id: 747262
- Matching level: species
strain history
- @ref: 68995
- history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Hel1_10
doi: 10.13145/bacdive169659.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Sediminibacter
- species: Sediminibacter sp.
- full scientific name: Sediminibacter Khan et al. 2007
@ref: 68995
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Sediminibacter
species: Sediminibacter sp.
full scientific name: Sediminibacter sp.
strain designation: Hel_I_10, Hel1_10
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94 | |
| 69480 | 97.981 | negative |
multimedia
- @ref: 68995
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29656.jpg
- caption: DSM 29656, scale bar represents 1 µm
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 68995
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
culture temp
- @ref: 68995
- growth: positive
- type: growth
- temperature: 15
Isolation, sampling and environmental information
isolation
- @ref: 68995
- sample type: seawater sample
- geographic location: Helgoland
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 54.1842
- longitude: 7.9
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sediminibacter sp. Hel_I_10 | GCA_000688335 | contig | ncbi | 1392490 |
| 66792 | Sediminibacter sp. Hel_I_10 | 1392490.5 | wgs | patric | 1392490 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.981 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.996 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.48 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.616 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.414 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94 | no |
External links
@ref: 68995
culture collection no.: DSM 29656
straininfo link
- @ref: 115837
- straininfo: 399523
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68995 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29656 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29656) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115837 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399523.1 |