Strain identifier
BacDive ID: 169631
Type strain: 
Species: Clostridium chromiireducens
Strain Designation: NM79_F5
Strain history: <- W. Navarre, Toronto; NM79_F5
General
@ref: 68954
BacDive-ID: 169631
DSM-Number: 110167
keywords: genome sequence, Bacteria, mesophilic
description: Clostridium chromiireducens NM79_F5 is a mesophilic bacterium that was isolated from caecal/colon content; C57BL/6, APCmin/+ Msh2-/-, 9-week-old mouse.
strain history
- @ref: 68954
- history: <- W. Navarre, Toronto; NM79_F5
doi: 10.13145/bacdive169631.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium chromiireducens
- full scientific name: Clostridium chromiireducens Inglett et al. 2011
@ref: 68954
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium chromiireducens
full scientific name: Clostridium chromiireducens Inglett et al. 2011
strain designation: NM79_F5
type strain: no
Culture and growth conditions
culture medium
- @ref: 68954
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium339.pdf
culture temp
- @ref: 68954
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 68954
- sample type: caecal/colon content; C57BL/6, APCmin/+ Msh2-/-, 9-week-old mouse
- geographic location: Toronto
- country: Canada
- origin.country: CAN
- continent: North America
Safety information
risk assessment
- @ref: 68954
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Clostridium chromiireducens NM79_F5
- accession: GCA_009767885
- assembly level: contig
- database: ncbi
- NCBI tax ID: 225345
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 83.287 | no |
| flagellated | yes | 68.902 | no |
| gram-positive | yes | 64.427 | no |
| anaerobic | yes | 97.238 | no |
| aerobic | no | 96.274 | no |
| halophile | no | 98.371 | no |
| spore-forming | yes | 94.117 | no |
| glucose-util | yes | 87.39 | no |
| thermophile | no | 99.543 | yes |
| glucose-ferment | yes | 64.875 | no |
External links
@ref: 68954
culture collection no.: DSM 110167
straininfo link
- @ref: 115810
- straininfo: 398015
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68954 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110167 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110167) | |
| 115810 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398015.1 |