Strain identifier
BacDive ID: 169608
Type strain: 
Species: Shewanella sp.
Strain Designation: 10N.286.51.B7
Strain history: <- N. Bartlau, Univ. Vienna; 10N.286.51.B7 (Shewanella sp.) {2022} <- K. Kauffman, Univ. Vienna; 10N.286.51.B7 (Shewanella sp.) {2010}
General
@ref: 68927
BacDive-ID: 169608
DSM-Number: 113865
keywords: genome sequence, Bacteria, mesophilic
description: Shewanella sp. 10N.286.51.B7 is a mesophilic bacterium that was isolated from Coastal surface water.
strain history
- @ref: 68927
- history: <- N. Bartlau, Univ. Vienna; 10N.286.51.B7 (Shewanella sp.) {2022} <- K. Kauffman, Univ. Vienna; 10N.286.51.B7 (Shewanella sp.) {2010}
doi: 10.13145/bacdive169608.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella sp.
- full scientific name: Shewanella MacDonell and Colwell 1986
@ref: 68927
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella sp.
full scientific name: Shewanella sp.
strain designation: 10N.286.51.B7
type strain: no
Morphology
multimedia
- @ref: 68927
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_113865.jpg
- caption: DSM 113865, scale bar represents µm
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 68927
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
culture temp
- @ref: 68927
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 68927
- sample type: Coastal surface water
- geographic location: Massachusetts
- country: USA
- origin.country: USA
- continent: North America
- latitude: 42.4198
- longitude: -70.9071
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Shewanella sp. 10N.286.51.B7 | GCA_002873615 | scaffold | ncbi | 1880836 |
| 66792 | Shewanella sp. 10N.286.51.B7 | 1880836.3 | patric | 1880836 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 79.557 | no |
| gram-positive | no | 98.87 | no |
| anaerobic | no | 96.626 | no |
| halophile | yes | 58.3 | no |
| spore-forming | no | 96.008 | no |
| glucose-util | yes | 88.499 | no |
| aerobic | yes | 60.136 | no |
| thermophile | no | 99.651 | no |
| motile | yes | 86.95 | no |
| glucose-ferment | no | 65.061 | no |
External links
@ref: 68927
culture collection no.: DSM 113865
straininfo link
- @ref: 115788
- straininfo: 397478
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68927 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-113865 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 113865) | |
| 115788 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397478.1 |