Strain identifier

BacDive ID: 169450

Type strain: No

Species: Pseudonocardia sp.

Strain Designation: C8

Strain history: <- H. Groß, Eberhard-Karls-Universität Tübingen, Tübingen, Germany; C8

NCBI tax ID(s): 60912 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 9.1 (current version)

General

@ref: 68731

BacDive-ID: 169450

DSM-Number: 113319

keywords: genome sequence, Bacteria

description: Pseudonocardia sp. C8 is a bacterium that was isolated from Mud Dauber Wasp Nest.

NCBI tax id

  • NCBI tax id: 60912
  • Matching level: species

strain history

  • @ref: 68731
  • history: <- H. Groß, Eberhard-Karls-Universität Tübingen, Tübingen, Germany; C8

doi: 10.13145/bacdive169450.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Pseudonocardia
  • species: Pseudonocardia sp.
  • full scientific name: Pseudonocardia Henssen 1957 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinobispora
    20215Amycolata
    20215Pseudoamycolata

@ref: 68731

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Pseudonocardiales

family: Pseudonocardiaceae

genus: Pseudonocardia

species: Pseudonocardia sp.

full scientific name: Pseudonocardia sp.

strain designation: C8

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 90.789

Culture and growth conditions

culture medium

  • @ref: 68731
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

  • @ref: 68731
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: aerobe
  • confidence: 90.161

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
68731-++/-+/--++/---------++---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
68731-----+-+++/-+++++-+/-++/-+

Isolation, sampling and environmental information

isolation

  • @ref: 68731
  • sample type: Mud Dauber Wasp Nest
  • geographic location: Bansgadi Municipality, Bardia District
  • country: Nepal
  • origin.country: NPL
  • continent: Asia
  • latitude: 28.2405
  • longitude: 81.5229

Sequence information

Genome sequences

  • @ref: 66792
  • description: Pseudonocardia sp. C8
  • accession: GCA_014267175
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2762759

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes90.789no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.636no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.161no
69480spore-formingspore-formingAbility to form endo- or exosporesyes69.377no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.694no
69480flagellatedmotile2+Ability to perform flagellated movementno86no

External links

@ref: 68731

culture collection no.: DSM 113319

straininfo link

  • @ref: 115668
  • straininfo: 396848

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
68731Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-113319Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 113319)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
115668Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396848.1