Strain identifier

BacDive ID: 169449

Type strain: No

Species: Pseudonocardia sp.

Strain Designation: Q2

Strain history: <- J. Wink, HZI, Braunschweig, Germany; Q2 <- N. Safaei, HZI, Braunschweig, Germany; Q2

NCBI tax ID(s): 2865833 (species)

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General

@ref: 68730

BacDive-ID: 169449

DSM-Number: 110487

keywords: genome sequence, Bacteria

description: Pseudonocardia sp. Q2 is a bacterium that was isolated from Sand.

NCBI tax id

  • NCBI tax id: 2865833
  • Matching level: species

strain history

  • @ref: 68730
  • history: <- J. Wink, HZI, Braunschweig, Germany; Q2 <- N. Safaei, HZI, Braunschweig, Germany; Q2

doi: 10.13145/bacdive169449.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Pseudonocardia
  • species: Pseudonocardia sp.
  • full scientific name: Pseudonocardia Henssen 1957 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinobispora
    20215Amycolata
    20215Pseudoamycolata

@ref: 68730

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Pseudonocardiales

family: Pseudonocardiaceae

genus: Pseudonocardia

species: Pseudonocardia sp.

full scientific name: Pseudonocardia sp.

strain designation: Q2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 68730
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

  • @ref: 68730
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382alpha-chymotrypsin-3.4.21.1
68382naphthol-AS-BI-phosphohydrolase-
68382beta-galactosidase+3.2.1.23
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
68730-++/-+/--+++/-+/--+/--+/-++/-++---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
68730-----+++------------

Isolation, sampling and environmental information

isolation

  • @ref: 68730
  • sample type: Sand
  • geographic location: Beach of New Hengam (26° 40' 25.32'' N, 55° 52' 39.72'' E)
  • country: Iran
  • origin.country: IRN
  • continent: Asia
  • latitude: 26.6737
  • longitude: 55.8777

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudonocardia sp. DSM 110487GCA_019468565completencbi2865833
66792Pseudonocardia sp. DSM 1104872865833.3completepatric2865833

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes85.265no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.788no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes85.869no
69480spore-formingspore-formingAbility to form endo- or exosporesyes72.707no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.4yes
69480flagellatedmotile2+Ability to perform flagellated movementno84no

External links

@ref: 68730

culture collection no.: DSM 110487

straininfo link

  • @ref: 115667
  • straininfo: 407452

literature

  • topic: Genetics
  • Pubmed-ID: 34913719
  • title: Complete Genome Sequences of Two Novel Species from the Pseudonocardiaceae Family Isolated from the Persian Gulf.
  • authors: Safaei N, Bunk B, Sproer C, Wink J, Mast Y
  • journal: Microbiol Resour Announc
  • DOI: 10.1128/MRA.00918-21
  • year: 2021
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
68730Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110487Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110487)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
115667Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407452.1