Strain identifier
BacDive ID: 169366
Type strain: 
Species: Cellulomonas sp.
Strain Designation: A375-1
Strain history: <- G. Suen, Dept. Bacteriology, Univ. Wisconsin-Madison, USA; A375-1
NCBI tax ID(s): 40001 (species)
version 9.3 (current version)
General
@ref: 68637
BacDive-ID: 169366
DSM-Number: 100724
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Cellulomonas sp. A375-1 is a mesophilic, Gram-positive bacterium that was isolated from marsh soil collected 1 km northwest of the Univ. of Wisconsin-Madison.
NCBI tax id
- NCBI tax id: 40001
- Matching level: species
strain history
- @ref: 68637
- history: <- G. Suen, Dept. Bacteriology, Univ. Wisconsin-Madison, USA; A375-1
doi: 10.13145/bacdive169366.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Cellulomonadaceae
- genus: Cellulomonas
- species: Cellulomonas sp.
- full scientific name: Cellulomonas Bergey et al. 1923 (Approved Lists 1980)
@ref: 68637
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Cellulomonadaceae
genus: Cellulomonas
species: Cellulomonas sp.
full scientific name: Cellulomonas sp.
strain designation: A375-1
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | positive | 99 |
| 125438 | positive | 91.909 |
Culture and growth conditions
culture medium
- @ref: 68637
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
culture temp
- @ref: 68637
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.9
Isolation, sampling and environmental information
isolation
- @ref: 68637
- sample type: marsh soil collected 1 km northwest of the Univ. of Wisconsin-Madison
- country: USA
- origin.country: USA
- continent: North America
- latitude: 43.0667
- longitude: -89.4167
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cellulomonas sp. A375-1 | GCA_001040865 | scaffold | ncbi | 1672219 |
| 66792 | Cellulomonas sp. A375-1 | 1672219.3 | wgs | patric | 1672219 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.909 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.644 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 63.223 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 64.929 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 67.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 60.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 69.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.9 |
External links
@ref: 68637
culture collection no.: DSM 100724
straininfo link
- @ref: 115590
- straininfo: 402649
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68637 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100724 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100724) | |
| 115590 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402649.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |