Strain identifier
BacDive ID: 169289
Type strain: 
Species: Sutcliffiella rhizosphaerae
Strain Designation: JJ-125
Strain history: <- P. Kämpfer; Justus-Liebig-Universität, Giessen, Germany; <- J. A. McInroy; Department of Entomology and Plant Pathology, Auburn University, Alabama, USA;
NCBI tax ID(s): 2880967 (species)
version 9.1 (current version)
General
@ref: 68542
BacDive-ID: 169289
DSM-Number: 111262
keywords: genome sequence, Bacteria, spore-forming, motile
description: Sutcliffiella rhizosphaerae JJ-125 is a spore-forming, motile bacterium that was isolated from root.
NCBI tax id
- NCBI tax id: 2880967
- Matching level: species
strain history
- @ref: 68542
- history: <- P. Kämpfer; Justus-Liebig-Universität, Giessen, Germany; <- J. A. McInroy; Department of Entomology and Plant Pathology, Auburn University, Alabama, USA;
doi: 10.13145/bacdive169289.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Sutcliffiella
- species: Sutcliffiella rhizosphaerae
- full scientific name: Sutcliffiella rhizosphaerae Kämpfer et al. 2022
@ref: 68542
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Sutcliffiella
species: Sutcliffiella rhizosphaerae
full scientific name: Sutcliffiella rhizosphaerae Kämpfer et al. 2022
strain designation: JJ-125
type strain: yes
Culture and growth conditions
culture medium
- @ref: 68542
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
culture temp
- @ref: 68542
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 94.754
Isolation, sampling and environmental information
isolation
- @ref: 68542
- sample type: root
- geographic location: Dunbar, Nebraska
- country: USA
- origin.country: USA
- continent: North America
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sutcliffiella rhizosphaerae CIP 111883 | GCA_917563925 | scaffold | ncbi | 2880967 |
| 66792 | Bacillus sp. JJ-125 strain CIP111883 | 2880967.4 | wgs | patric | 2880967 |
| 66792 | Bacillus sp. JJ-125 strain CIP111883 | 2880967.3 | wgs | patric | 2880967 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 74.208 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.607 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 74.567 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 94.754 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 88.242 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 88.232 | no |
External links
@ref: 68542
culture collection no.: DSM 111262, CIP 111883, LMG 32156, CCM 9046
straininfo link
- @ref: 115528
- straininfo: 406707
literature
- topic: Phylogeny
- Pubmed-ID: 36223177
- title: Sutcliffiella rhizosphaerae sp. nov. isolated from roots.
- authors: Kampfer P, Glaeser SP, Lipski A, McInroy JA, Clermont D, Criscuolo A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.005590
- year: 2022
- mesh: *Bacillaceae/genetics, Bacterial Typing Techniques, Base Composition, Cardiolipins, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleotides, Peptidoglycan/chemistry, *Phosphatidylethanolamines, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry, Zea mays/microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68542 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111262 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111262) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115528 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406707.1 |