Strain identifier
BacDive ID: 169288
Type strain: 
Species: Rhodopseudomonas palustris
Strain Designation: 1850
Strain history: <- N. Pfennig, 1850
NCBI tax ID(s): 1076 (species)
version 9.1 (current version)
General
@ref: 2109
BacDive-ID: 169288
DSM-Number: 126
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Rhodopseudomonas palustris 1850 is a Gram-negative bacterium that was isolated from polluted pond.
NCBI tax id
- NCBI tax id: 1076
- Matching level: species
strain history
- @ref: 2109
- history: <- N. Pfennig, 1850
doi: 10.13145/bacdive169288.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Rhodopseudomonas
- species: Rhodopseudomonas palustris
- full scientific name: Rhodopseudomonas palustris (Molisch 1907) van Niel 1944 (Approved Lists 1980)
synonyms
@ref synonym 20215 Rhodobacillus palustris 20215 Rhodopseudomonas rutila
@ref: 2109
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Nitrobacteraceae
genus: Rhodopseudomonas
species: Rhodopseudomonas palustris
full scientific name: Rhodopseudomonas palustris (Molisch 1907) van Niel 1944 emend. Venkata Ramana et al. 2012
strain designation: 1850
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.319
Culture and growth conditions
culture medium
- @ref: 2109
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium27.pdf
culture temp
- @ref: 2109
- growth: positive
- type: growth
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 2109
- sample type: polluted pond
- geographic location: Zeulenroda, Thüringen
- country: Germany
- origin.country: DEU
- continent: Europe
Safety information
risk assessment
- @ref: 2109
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 124043 | R.palustris 16S rRNA gene | X71839 | 2826 | nuccore | 1076 |
| 124043 | R.palustris 16S rRNA gene | X87279 | 1482 | nuccore | 1076 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodopseudomonas palustris DSM 126 | GCA_002937155 | contig | ncbi | 1076 |
| 66792 | Rhodopseudomonas palustris strain DSM 126 | 1076.28 | wgs | patric | 1076 |
GC content
- @ref: 2109
- GC-content: 64.8
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.319 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 66.964 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.895 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 65.667 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.966 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 75.029 | no |
External links
@ref: 2109
culture collection no.: DSM 126, Pfennig 1850
straininfo link
- @ref: 115527
- straininfo: 12656
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2109 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 126) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-126 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 115527 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12656.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |