Strain identifier

BacDive ID: 169198

Type strain: No

Species: Parabacteroides distasonis

Strain Designation: 31/2

Strain history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; HM-169 <- Univ. Calgary, Canada

NCBI tax ID(s): 823 (species)

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General

@ref: 68435

BacDive-ID: 169198

DSM-Number: 24965

keywords: Bacteria

description: Parabacteroides distasonis 31/2 is a bacterium that was isolated from human gut biopsy, clinical sample.

NCBI tax id

  • NCBI tax id: 823
  • Matching level: species

strain history

  • @ref: 68435
  • history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; HM-169 <- Univ. Calgary, Canada

doi: 10.13145/bacdive169198.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Tannerellaceae
  • genus: Parabacteroides
  • species: Parabacteroides distasonis
  • full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides distasonis

@ref: 68435

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Tannerellaceae

genus: Parabacteroides

species: Parabacteroides distasonis

full scientific name: Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016

strain designation: 31/2

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
68435COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
68435CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium78.pdf
68435FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1203a.pdf

culture temp

  • @ref: 68435
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836730911sorbitol-builds acid from
6836716024D-mannose+builds acid from
6836717754glycerol-builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose+builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380alanine arylamidase+3.4.11.2
68380leucine arylamidase+3.4.11.1
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
68435--+-+++++--+-+/-++/-+/--+/-+/-

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
68435--++-+++-++++---++-++/-++/-+/-++/-+/-+-

Isolation, sampling and environmental information

isolation

  • @ref: 68435
  • sample type: human gut biopsy, clinical sample
  • geographic location: Alberta
  • country: Canada
  • origin.country: CAN
  • continent: North America
  • latitude: 51.0486
  • longitude: -114.071

Safety information

risk assessment

  • @ref: 68435
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 68435

culture collection no.: DSM 24965, BEI HM-169

straininfo link

  • @ref: 115444
  • straininfo: 407898

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
68435Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24965Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24965)
115444Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407898.1