Strain identifier
BacDive ID: 169178
Type strain: 
Species: Bacillus sp.
Strain Designation: SJS
Strain history: <- J. Newman, Lycoming College, Williamsport, USA; SJS
NCBI tax ID(s): 1409 (species)
version 9.1 (current version)
General
@ref: 68415
BacDive-ID: 169178
DSM-Number: 29237
keywords: genome sequence, Bacteria, spore-forming, Gram-positive
description: Bacillus sp. SJS is a spore-forming, Gram-positive bacterium that was isolated from freshwater creek.
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
- @ref: 68415
- history: <- J. Newman, Lycoming College, Williamsport, USA; SJS
doi: 10.13145/bacdive169178.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 68415
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: SJS
type strain: no
Culture and growth conditions
culture medium
- @ref: 68415
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
culture temp
- @ref: 68415
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 94.968
Isolation, sampling and environmental information
isolation
- @ref: 68415
- sample type: freshwater creek
- geographic location: PA, Montoursville
- country: USA
- origin.country: USA
- continent: North America
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus sp. SJS | GCA_000732485 | contig | ncbi | 1423321 |
| 66792 | Bacillus sp. SJS | 1423321.9 | wgs | patric | 1423321 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.867 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.617 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 94.968 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.573 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.275 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 83.392 | no |
External links
@ref: 68415
culture collection no.: DSM 29237
straininfo link
- @ref: 115424
- straininfo: 397457
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68415 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29237 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29237) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115424 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397457.1 |