Strain identifier

BacDive ID: 169021

Type strain: Yes

Species: Salininema proteolyticum

Strain Designation: Miq-4

NCBI tax ID(s): 1607685 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20215

BacDive-ID: 169021

keywords: 16S sequence, Bacteria

description: Salininema proteolyticum Miq-4 is a bacterium of the family Glycomycetaceae.

NCBI tax id

  • NCBI tax id: 1607685
  • Matching level: species

doi: 10.13145/bacdive169021.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Glycomycetales
  • family: Glycomycetaceae
  • genus: Salininema
  • species: Salininema proteolyticum
  • full scientific name: Salininema proteolyticum Nikou et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Paraglycomyces xinjiangensis

@ref: 20215

domain: Bacteria

phylum: Actinomycetota

class: Actinomycetes

order: Glycomycetales

family: Glycomycetaceae

genus: Salininema

species: Salininema proteolyticum

full scientific name: Salininema proteolyticum Nikou et al. 2015

strain designation: Miq-4

type strain: yes

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_68774.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_344;96_29597;97_37346;98_48391;99_68774&stattab=map
  • Last taxonomy: Salininema proteolyticum subclade
  • 16S sequence: MT760320
  • Sequence Identity:
  • Total samples: 357
  • soil counts: 52
  • aquatic counts: 25
  • animal counts: 278
  • plant counts: 2

Safety information

risk assessment

  • @ref: 20215
  • biosafety level: 1
  • biosafety level comment: Risk group

Sequence information

16S sequences

  • @ref: 20215
  • description: Salininema proteolyticum strain IBRC-M 10908 16S ribosomal RNA gene, partial sequence
  • accession: MT760320
  • length: 1355
  • database: ena
  • NCBI tax ID: 1607685

External links

@ref: 20215

culture collection no.: LMG 28391, IBRC-M 10908

straininfo link

  • @ref: 115343
  • straininfo: 396424

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26219545Salininema proteolyticum gen. nov., sp. nov., a halophilic rare actinomycete isolated from wetland soil, and emended description of the family Glycomycetaceae.Moshtaghi Nikou M, Ramezani M, Ali Amoozegar M, Rasouli M, Abolhassan Shahzadeh Fazeli S, Schumann P, de la Haba RR, Ventosa AInt J Syst Evol Microbiol10.1099/ijsem.0.0004832015Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Iran, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsGenetics
Phylogeny27088835Description of Salilacibacter albus gen. nov., sp. nov., isolated from a dried salt lake, and reclassification of Paraglycomyces xinjiangensis Luo et al. 2015 as a later heterotypic synonym of Salininema proteolyticum Nikou et al. 2015 with emended descriptions of the genus Salininema and Salininema proteolyticum.Li XJ, Liu JM, Wu Y, Zhang WM, Li J, Liu SW, Wu G, Hu L, Chen L, Huang DL, Li RF, Sun CHInt J Syst Evol Microbiol10.1099/ijsem.0.0010932016Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lakes/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Sodium ChlorideTranscriptome
Phylogeny33999794Natronoglycomyces albus gen. nov., sp. nov, a haloalkaliphilic actinobacterium from a soda solonchak soil.Sorokin DY, Khijniak TV, Zakharycheva AP, Elcheninov AG, Hahnke RL, Boueva OV, Ariskina EV, Bunk B, Kublanov IV, Evtushenko LIInt J Syst Evol Microbiol10.1099/ijsem.0.0048042021Actinobacteria/*classification/isolation & purification, Alkalies, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Mongolia, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/chemistry, *Soil Microbiology, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
115343Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396424.1