Strain identifier
BacDive ID: 168961
Type strain: 
Species: Methylococcus capsulatus
NCBI tax ID(s): 1224744 (strain), 414 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 168961
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Methylococcus capsulatus ATCC 19069 is a Gram-negative bacterium of the family Methylococcaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1224744 | strain |
| 414 | species |
doi: 10.13145/bacdive168961.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Methylococcales
- family: Methylococcaceae
- genus: Methylococcus
- species: Methylococcus capsulatus
- full scientific name: Methylococcus capsulatus Foster and Davis 1966 (Approved Lists 1980)
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Methylococcales
family: Methylococcaceae
genus: Methylococcus
species: Methylococcus capsulatus
full scientific name: Methylococcus capsulatus Foster and Davis 1966 (Approved Lists 1980)
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.5
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_6604.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_418;96_3129;97_3833;98_4869;99_6604&stattab=map
- Last taxonomy: Methylococcus capsulatus subclade
- 16S sequence: AJ563935
- Sequence Identity:
- Total samples: 2119
- soil counts: 521
- aquatic counts: 1316
- animal counts: 154
- plant counts: 128
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Methylococcus capsulatus partial 16S rRNA gene, strain Texas
- accession: AJ563935
- length: 1481
- database: nuccore
- NCBI tax ID: 1224744
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methylococcus capsulatus str. Texas = ATCC 19069 | GCA_000297615 | contig | ncbi | 1224744 |
| 66792 | Methylococcus capsulatus str. Texas = ATCC 19069 | GCA_000424685 | scaffold | ncbi | 1224744 |
| 66792 | Methylococcus capsulatus str. Texas = ATCC 19069 | 1224744.3 | wgs | patric | 1224744 |
| 66792 | Methylococcus capsulatus str. Texas = ATCC 19069 | 1224744.11 | wgs | patric | 1224744 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 77.529 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 57.791 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.763 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 90.165 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 58.724 | no |
External links
@ref: 20215
culture collection no.: ATCC 19069, UNIQEM 1
straininfo link
- @ref: 115322
- straininfo: 44538
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 115322 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID44538.1 |