Strain identifier
BacDive ID: 168960
Type strain: 
Species: Hoeflea olei
Strain Designation: JC234
NCBI tax ID(s): 1480615 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 168960
keywords: genome sequence, 16S sequence, Bacteria, motile
description: Hoeflea olei JC234 is a motile bacterium of the family Rhizobiaceae.
NCBI tax id
- NCBI tax id: 1480615
- Matching level: species
doi: 10.13145/bacdive168960.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Hoeflea
- species: Hoeflea olei
- full scientific name: Hoeflea olei Rahul et al. 2015
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Hoeflea
species: Hoeflea olei
full scientific name: Hoeflea olei Rahul et al. 2015
strain designation: JC234
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.904
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_1597.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_488;97_557;98_640;99_1597&stattab=map
- Last taxonomy: Hoeflea
- 16S sequence: HG965759
- Sequence Identity:
- Total samples: 7663
- soil counts: 1521
- aquatic counts: 2709
- animal counts: 840
- plant counts: 2593
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Hoeflea olei partial 16S rRNA gene, type strain JC234T
- accession: HG965759
- length: 1423
- database: nuccore
- NCBI tax ID: 1480615
Genome sequences
- @ref: 66792
- description: Hoeflea olei JC234
- accession: GCA_001703635
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1480615
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.28 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 82.198 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.904 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.45 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 73.228 | no |
External links
@ref: 20215
culture collection no.: KCTC 42071, LMG 28200
literature
- topic: Phylogeny
- Pubmed-ID: 25899504
- title: Hoeflea olei sp. nov., a diesel-oil-degrading, anoxygenic, phototrophic bacterium isolated from backwaters and emended description of the genus Hoeflea.
- authors: Rahul K, Azmatunnisa M, Sasikala C, Ramana CV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000277
- year: 2015
- mesh: Bacterial Typing Techniques, Bacteriochlorophyll A/chemistry, Base Composition, Carotenoids/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gasoline/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Water Pollutants, Chemical/*chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |