Strain identifier
BacDive ID: 168959
Type strain: 
Species: Coprococcus comes
NCBI tax ID(s): 470146 (strain), 410072 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 168959
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-positive, human pathogen
description: Coprococcus comes ATCC 27758 is an anaerobe, Gram-positive human pathogen of the family Lachnospiraceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 410072 | species |
| 470146 | strain |
doi: 10.13145/bacdive168959.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Coprococcus
- species: Coprococcus comes
- full scientific name: Coprococcus comes Holdeman and Moore 1974 (Approved Lists 1980)
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Coprococcus
species: Coprococcus comes
full scientific name: Coprococcus comes Holdeman and Moore 1974 (Approved Lists 1980)
type strain: yes
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 90.219
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_521.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_333;97_371;98_423;99_521&stattab=map
- Last taxonomy: Coprococcus comes subclade
- 16S sequence: EF031542
- Sequence Identity:
- Total samples: 74418
- soil counts: 353
- aquatic counts: 1751
- animal counts: 72087
- plant counts: 227
Safety information
risk assessment
- @ref: 20215
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Coprococcus comes strain ATCC 27758 16S ribosomal RNA gene, partial sequence
- accession: EF031542
- length: 1453
- database: nuccore
- NCBI tax ID: 470146
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Coprococcus comes ATCC 27758 | GCA_000155875 | scaffold | ncbi | 470146 |
| 66792 | Coprococcus comes ATCC 27758 | GCA_025149785 | complete | ncbi | 470146 |
| 66792 | Coprococcus comes ATCC 27758 | 470146.3 | wgs | patric | 470146 |
| 66792 | Coprococcus comes ATCC 27758 | 470146.24 | complete | patric | 470146 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 78.493 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 90.219 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.451 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 53.01 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.483 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 81.396 | no |
External links
@ref: 20215
culture collection no.: ATCC 27758, VPI C1-38
straininfo link
- @ref: 115321
- straininfo: 39161
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26637816 | Sellimonas intestinalis gen. nov., sp. nov., isolated from human faeces. | Seo B, Yoo JE, Lee YM, Ko G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000817 | 2015 | ||
| Phylogeny | 29204666 | Glucerabacter canisensis gen. nov., sp. nov., isolated from dog feces and its effect on the hydrolysis of plant glucosylceramide in the intestine of dogs. | Kawata M, Tsukamoto A, Isozaki R, Nobukawa S, Kawahara N, Akutsu S, Suzuki M, Asanuma N | Arch Microbiol | 10.1007/s00203-017-1463-1 | 2017 | Animals, Base Composition, Clostridium/*genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, Dogs, Fatty Acids/analysis/chemistry, Feces/microbiology, Female, Glucosylceramides/*metabolism, Hydrolysis, Intestines/microbiology, Molecular Typing, Phylogeny, Plant Extracts/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Metabolism |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 115321 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID39161.1 |