Strain identifier
BacDive ID: 16895
Type strain: 
Species: Thermodesulfobacterium thermophilum
Strain Designation: 7
Strain history: <- VKM <- E.P. Rozanova and A.J. Khudyakova, 7 (Desulfovibrio thermophilus)
NCBI tax ID(s): 1123373 (strain), 886 (species)
version 8.1 (current version)
General
@ref: 600
BacDive-ID: 16895
DSM-Number: 1276
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, Gram-negative
description: Thermodesulfobacterium thermophilum 7 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from stratal water of a petroleum deposit.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1123373 | strain |
| 886 | species |
strain history
- @ref: 600
- history: <- VKM <- E.P. Rozanova and A.J. Khudyakova, 7 (Desulfovibrio thermophilus)
doi: 10.13145/bacdive16895.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermodesulfobacteriota
- domain: Bacteria
- phylum: Thermodesulfobacteriota
- class: Thermodesulfobacteria
- order: Thermodesulfobacteriales
- family: Thermodesulfobacteriaceae
- genus: Thermodesulfobacterium
- species: Thermodesulfobacterium thermophilum
- full scientific name: Thermodesulfobacterium thermophilum (Rozanova and Khudyakova 1974) Rozanova and Pivovarova 1995
synonyms
@ref synonym 20215 Desulfovibrio thermophilus 20215 Thermodesulfobacterium mobile
@ref: 600
domain: Bacteria
phylum: Thermodesulfobacteria
class: Thermodesulfobacteria
order: Thermodesulfobacteriales
family: Thermodesulfobacteriaceae
genus: Thermodesulfobacterium
species: Thermodesulfobacterium thermophilum
full scientific name: Thermodesulfobacterium thermophilum (Rozanova and Khudyakova 1974) Rozanova and Pivovarova 1995
strain designation: 7
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.99
Culture and growth conditions
culture medium
- @ref: 600
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 600 | positive | growth | 65 | thermophilic | |
| 69480 | thermophilic | 99.999 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 600 | anaerobe | |
| 69480 | anaerobe | 99.741 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.971
Isolation, sampling and environmental information
isolation
- @ref: 600
- sample type: stratal water of a petroleum deposit
- geographic location: Caspian Sea
- country: USSR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_5468.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_515;96_2584;97_3166;98_4084;99_5468&stattab=map
- Last taxonomy: Thermodesulfobacterium
- 16S sequence: AF334601
- Sequence Identity:
- Total samples: 122
- soil counts: 2
- aquatic counts: 88
- animal counts: 31
- plant counts: 1
Safety information
risk assessment
- @ref: 600
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 600
- description: Thermodesulfobacterium thermophilum strain DSM 1276 16S ribosomal RNA gene, partial sequence
- accession: AF334601
- length: 1520
- database: ena
- NCBI tax ID: 886
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermodesulfobacterium thermophilum DSM 1276 | GCA_000421605 | contig | ncbi | 1123373 |
| 66792 | Thermodesulfobacterium thermophilum DSM 1276 | 1123373.3 | wgs | patric | 1123373 |
| 66792 | Thermodesulfobacterium thermophilum DSM 1276 | 2523533618 | draft | img | 1123373 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 65 | no |
| motile | yes | 89.156 | no |
| flagellated | no | 91.303 | no |
| gram-positive | no | 99.53 | no |
| anaerobic | yes | 99.999 | no |
| halophile | no | 84.653 | no |
| spore-forming | no | 97.719 | no |
| thermophile | yes | 100 | yes |
| glucose-util | no | 63.62 | no |
| aerobic | no | 99.686 | yes |
| glucose-ferment | no | 85.163 | no |
External links
@ref: 600
culture collection no.: DSM 1276, VKM B-1128
straininfo link
- @ref: 85901
- straininfo: 47346
literature
- topic: Enzymology
- Pubmed-ID: 2165817
- title: Purification and characterization of bisulfite reductase (desulfofuscidin) from Desulfovibrio thermophilus and its complexes with exogenous ligands.
- authors: Fauque G, Lino AR, Czechowski M, Kang L, DerVartanian DV, Moura JJ, LeGall J, Moura I
- journal: Biochim Biophys Acta
- DOI: 10.1016/0167-4838(90)90154-8
- year: 1990
- mesh: Amino Acids/analysis, Desulfovibrio/*enzymology/growth & development, Electron Spin Resonance Spectroscopy, Kinetics, Ligands, Macromolecular Substances, Molecular Weight, Oxidoreductases/*isolation & purification, Oxidoreductases Acting on Sulfur Group Donors/*isolation & purification/metabolism, Protein Binding, Species Specificity, Spectrophotometry
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 600 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1276) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1276 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 85901 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47346.1 | StrainInfo: A central database for resolving microbial strain identifiers |