Strain identifier
BacDive ID: 168832
Type strain: 
Species: Thermomonas carbonis
Strain Designation: GZ436
NCBI tax ID(s): 1463158 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 168832
keywords: genome sequence, 16S sequence, Bacteria
description: Thermomonas carbonis GZ436 is a bacterium of the family Lysobacteraceae.
NCBI tax id
- NCBI tax id: 1463158
- Matching level: species
doi: 10.13145/bacdive168832.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Thermomonas
- species: Thermomonas carbonis
- full scientific name: Thermomonas carbonis Wang et al. 2014
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Thermomonas
species: Thermomonas carbonis
full scientific name: Thermomonas carbonis Wang et al. 2014
strain designation: GZ436
type strain: yes
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_12776.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_267;97_7848;98_9646;99_12776&stattab=map
- Last taxonomy: Thermomonas carbonis subclade
- 16S sequence: KF923805
- Sequence Identity:
- Total samples: 34414
- soil counts: 13661
- aquatic counts: 10850
- animal counts: 6581
- plant counts: 3322
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Thermomonas carbonis strain GZ436 16S ribosomal RNA gene, partial sequence
- accession: KF923805
- length: 1506
- database: ena
- NCBI tax ID: 1463158
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermomonas carbonis KCTC 42013 | GCA_014396975 | complete | ncbi | 1463158 |
| 66792 | Thermomonas carbonis KCTC 42013 | GCA_014652775 | contig | ncbi | 1463158 |
| 66792 | Thermomonas carbonis strain KCTC 42013 | 1463158.3 | complete | patric | 1463158 |
| 66792 | Thermomonas carbonis strain KCTC 42013 | 1463158.4 | wgs | patric | 1463158 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.247 | no |
| gram-positive | no | 98.595 | no |
| anaerobic | no | 99.234 | no |
| aerobic | yes | 93.936 | no |
| halophile | no | 96.941 | no |
| spore-forming | no | 96.918 | no |
| thermophile | no | 99.12 | no |
| glucose-util | yes | 89.13 | no |
| motile | no | 83.756 | no |
| glucose-ferment | no | 91.339 | no |
External links
@ref: 20215
culture collection no.: CCTCC AB 2013364, KCTC 42013, KCTC 42031
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25070215 | Thermomonas carbonis sp. nov., isolated from the soil of a coal mine. | Wang L, Zheng S, Wang D, Wang L, Wang G | Int J Syst Evol Microbiol | 10.1099/ijs.0.063800-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, *Coal, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 31380735 | Thermomonas aquatica sp. nov., isolated from an industrial wastewater treatment plant. | Ju JH, Kim JS, Lee DH, Jeon JH, Heo SY, Seo JW, Kim CH, Park DS, Oh BR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003630 | 2019 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry, Waste Water/*microbiology, Xanthomonadaceae/*classification/isolation & purification | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |