Strain identifier
BacDive ID: 16877
Type strain: 
Species: Thermococcus waiotapuensis
Strain Designation: WT1
Strain history: J. M. González WT1.
NCBI tax ID(s): 90909 (species)
version 9 (current version)
General
@ref: 4810
BacDive-ID: 16877
DSM-Number: 12768
keywords: 16S sequence, Archaea, anaerobe
description: Thermococcus waiotapuensis WT1 is an anaerobe archaeon that was isolated from waiotapu hot spring.
NCBI tax id
- NCBI tax id: 90909
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4810 | <- J. M. González; WT1 |
| 67770 | J. M. González WT1. |
doi: 10.13145/bacdive16877.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus waiotapuensis
- full scientific name: Thermococcus waiotapuensis González et al. 2001
@ref: 4810
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus waiotapuensis
full scientific name: Thermococcus waiotapuensis González et al. 2001
strain designation: WT1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4810
- name: THERMOCOCCUS WAIOTAPUENSE MEDIUM (DSMZ Medium 934)
- growth: yes
- link: https://mediadive.dsmz.de/medium/934
- composition: Name: THERMOCOCCUS WAIOTAPUENSE MEDIUM (DSMZ Medium 934) Composition: Sulphur 10.0 g/l MgCl2 5.8 g/l Tryptone 5.0 g/l Na2SO4 4.0 g/l NaCl 1.5 g/l CaCl2 1.5 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.75 g/l KCl 0.7 g/l NaHCO3 0.2 g/l KBr 0.1 g/l H3BO3 0.03 g/l SrCl2 0.025 g/l Resazurin 0.002 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 4810 | positive | growth | 82-85 |
| 67770 | positive | growth | 80 |
Physiology and metabolism
oxygen tolerance
- @ref: 4810
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4810 | waiotapu hot spring | Lake Taupo | New Zealand | NZL | Australia and Oceania |
| 67770 | Freshwater hot spring in the Lake Taupo area of North Island | New Zealand | NZL | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 4810
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Thermococcus waiotapuensis strain DSM 12768 16S ribosomal RNA gene, partial sequence | AY099187 | 1443 | nuccore | 90909 |
| 20218 | Thermococcus waiotapuensis strain DSM 12768 16S-23S ribosomal RNA intergenic spacer region, complete sequence | AY099223 | 183 | nuccore | 90909 |
| 4810 | Thermococcus waiotapuense 16S ribosomal RNA gene, partial sequence | AF134982 | 1367 | nuccore | 90909 |
| 67770 | Thermococcus waiotapuensis gene for 16S rRNA, partial sequence, strain:JCM 10985 | AB055127 | 1420 | nuccore | 90909 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 4810 | 50.4 | |
| 67770 | 50.4 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 4810
culture collection no.: DSM 12768, JCM 10985
straininfo link
- @ref: 85885
- straininfo: 101008
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4810 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12768) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12768 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85885 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101008.1 | StrainInfo: A central database for resolving microbial strain identifiers |