Strain identifier
BacDive ID: 16876
Type strain: 
Species: Thermococcus aegaeus
Strain Designation: BK17S6-3-b2, P5
Strain history: M. Thomm P5.
NCBI tax ID(s): 84597 (species)
version 8.1 (current version)
General
@ref: 4809
BacDive-ID: 16876
DSM-Number: 12767
keywords: 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Thermococcus aegaeus BK17S6-3-b2 is an anaerobe, hyperthermophilic archaeon that was isolated from marine hydrothermal vent.
NCBI tax id
- NCBI tax id: 84597
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4809 | <- M. Thomm; P5 |
| 67770 | M. Thomm P5. |
doi: 10.13145/bacdive16876.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus aegaeus
- full scientific name: Thermococcus aegaeus corrig. Arab et al. 2000
synonyms
- @ref: 20215
- synonym: Thermococcus aegaeicus
@ref: 4809
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus aegaeus
full scientific name: Thermococcus aegaeus Arab et al. 2000
strain designation: BK17S6-3-b2, P5
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4809
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4809 | positive | growth | 88-90 | hyperthermophilic |
| 67770 | positive | growth | 90 | hyperthermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 4809
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4809 | marine hydrothermal vent | Aegean See, Palaeochori Bay, Milos | Greece | GRC | Europe |
| 67770 | Sediment of Palaeochori Bay | Milos | Greece | GRC | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_188403.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17827;96_69204;97_89896;98_122226;99_188403&stattab=map
- Last taxonomy: Thermococcus
- 16S sequence: AY099171
- Sequence Identity:
- Total samples: 35
- soil counts: 1
- aquatic counts: 34
Safety information
risk assessment
- @ref: 4809
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Thermococcus aegaeus strain DSM 12767 16S ribosomal RNA gene, partial sequence | AY099171 | 1453 | ena | 84597 |
| 20218 | Thermococcus aegaeus strain DSM 12767 16S-23S ribosomal RNA intergenic spacer region, complete sequence | AY099207 | 185 | ena | 84597 |
| 20218 | Thermococcus aegeaicus (isolate P5) 16S rRNA gene, partial | AJ012643 | 1325 | ena | 84597 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 4809 | 45 | |
| 67770 | 45.5 | high performance liquid chromatography (HPLC) |
External links
@ref: 4809
culture collection no.: DSM 12767, JCM 10828
straininfo link
- @ref: 85884
- straininfo: 101004
literature
- topic: Phylogeny
- Pubmed-ID: 11155985
- title: Thermococcus aegaeicus sp. nov. and Staphylothermus hellenicus sp. nov., two novel hyperthermophilic archaea isolated from geothermally heated vents off Palaeochori Bay, Milos, Greece.
- authors: Arab H, Volker H, Thomm M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-50-6-2101
- year: 2000
- mesh: Base Composition, DNA, Ribosomal/analysis, Desulfurococcaceae/*classification/genetics/growth & development/isolation & purification, Greece, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Temperature, Thermococcus/*classification/genetics/growth & development/isolation & purification
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4809 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12767) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12767 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85884 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101004.1 | StrainInfo: A central database for resolving microbial strain identifiers |