Strain identifier
BacDive ID: 168633
Type strain: 
Species: Paracoccus halotolerans
Strain history: <- Guo-xing Nie, Henan Normal Univ., Xinxiang, China; CFH 90064 <- J. Huang;
NCBI tax ID(s): 2778531 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 168633
DSM-Number: 103234
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Paracoccus halotolerans CCTCC AB 2016131 is a Gram-negative bacterium that was isolated from sediment salt lake.
NCBI tax id
- NCBI tax id: 2778531
- Matching level: species
strain history
- @ref: 69036
- history: <- Guo-xing Nie, Henan Normal Univ., Xinxiang, China; CFH 90064 <- J. Huang;
doi: 10.13145/bacdive168633.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Paracoccus
- species: Paracoccus halotolerans
- full scientific name: Paracoccus halotolerans Meng et al. 2019
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Paracoccus
species: Paracoccus halotolerans
full scientific name: Paracoccus halotolerans Meng et al. 2019
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.5
multimedia
- @ref: 69036
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103234.jpg
- caption: DSM 103234; scale bar represents 2 µm
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 69036
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
culture temp
- @ref: 69036
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.186
Isolation, sampling and environmental information
isolation
- @ref: 69036
- sample type: sediment salt lake
- geographic location: Yungcheng salt lakes
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 35.0392
- longitude: 111.072
Sequence information
16S sequences
- @ref: 20215
- description: Paracoccus sp. (in: a-proteobacteria) strain CFH 90064 16S ribosomal RNA gene, partial sequence
- accession: KY039331
- length: 1418
- database: nuccore
- NCBI tax ID: 267
Genome sequences
- @ref: 66792
- description: Paracoccus saliphilus strain CCTCC AB 2016131
- accession: 405559.4
- assembly level: wgs
- database: patric
- NCBI tax ID: 405559
GC content
- @ref: 69036
- GC-content: 65.1
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.249 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.186 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.025 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.601 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 70.244 | no |
External links
@ref: 20215
culture collection no.: CCTCC AB 2016131, DSM 103234, CFH 90064
straininfo link
- @ref: 115217
- straininfo: 407202
literature
- topic: Phylogeny
- Pubmed-ID: 30570476
- title: Paracoccus halotolerans sp. nov., isolated from a salt lake.
- authors: Meng XL, Ming H, Huang JR, Zhang LY, Cheng LJ, Zhao ZL, Ji WL, Li WJ, Nie GX
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003190
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Nucleic Acid Hybridization, Paracoccus/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Saline Waters, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69036 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103234 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103234) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115217 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407202.1 |