Strain identifier
BacDive ID: 168632
Type strain: 
Species: Cyclobacterium jeungdonense
Strain Designation: HMD3055
NCBI tax ID(s): 708087 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 168632
keywords: genome sequence, 16S sequence, Bacteria
description: Cyclobacterium jeungdonense HMD3055 is a bacterium of the family Cyclobacteriaceae.
NCBI tax id
- NCBI tax id: 708087
- Matching level: species
doi: 10.13145/bacdive168632.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Cyclobacteriaceae
- genus: Cyclobacterium
- species: Cyclobacterium jeungdonense
- full scientific name: Cyclobacterium jeungdonense Joung et al. 2014
@ref: 20215
domain: Bacteria
phylum: Bacteroidota
class: Cytophagia
order: Cytophagales
family: Cyclobacteriaceae
genus: Cyclobacterium
species: Cyclobacterium jeungdonense
full scientific name: Cyclobacterium jeungdonense Joung et al. 2014
strain designation: HMD3055
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.5 | |
| 69480 | 94.5 | negative |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_129009.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15896;96_27817;97_35025;98_86399;99_129009&stattab=map
- Last taxonomy: Cyclobacterium jeungdonense subclade
- 16S sequence: MT760278
- Sequence Identity:
- Total samples: 16
- aquatic counts: 16
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Cyclobacterium jeungdonense strain CECT 7706 16S ribosomal RNA gene, partial sequence
- accession: MT760278
- length: 1357
- database: nuccore
- NCBI tax ID: 708087
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cyclobacterium jeungdonense KCTC 23150 | GCA_010994275 | contig | ncbi | 708087 |
| 66792 | Cyclobacterium jeungdonense strain KCTC 23150 | 708087.3 | wgs | patric | 708087 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 94.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.826 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.487 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.04 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.399 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90.5 | no |
External links
@ref: 20215
culture collection no.: KCTC 23150, CECT 7706
straininfo link
- @ref: 115216
- straininfo: 391813
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24002476 | Cyclobacterium jeungdonense sp. nov., isolated from a solar saltern. | Joung Y, Kim H, Kim SB, Joh K | Int J Syst Evol Microbiol | 10.1099/ijs.0.053546-0 | 2013 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology | Genetics |
| Phylogeny | 24425822 | Cyclobacterium halophilum sp. nov., a marine bacterium isolated from a coastal-marine wetland. | Shahinpei A, Amoozegar MA, Sepahy AA, Schumann P, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.058743-0 | 2013 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Iran, Molecular Sequence Data, Phosphatidylcholines/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, *Wetlands | Genetics |
| Phylogeny | 32463784 | Cyclobacterium salsum sp. nov. and Cyclobacterium roseum sp. nov., isolated from a saline lake. | Liu YH, Xie YG, Li L, Jiang HC, Mohamad OAA, Hozzein W, Fang BZ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004237 | 2020 | Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Saline Waters, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 115216 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391813.1 |