Strain identifier
BacDive ID: 168482
Type strain: 
Species: Acidisoma cellulosilyticum
Strain Designation: HW T5.17
NCBI tax ID(s): 2802395 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 168482
DSM-Number: 111007
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic
description: Acidisoma cellulosilyticum HW T5.17 is a psychrophilic bacterium that was isolated from decaying oak wood .
NCBI tax id
- NCBI tax id: 2802395
- Matching level: species
doi: 10.13145/bacdive168482.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acidisoma
- species: Acidisoma cellulosilyticum
- full scientific name: Acidisoma cellulosilyticum corrig. Mieszkin et al. 2022
synonyms
- @ref: 20215
- synonym: Acidisoma cellulosilytica
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acidisoma
species: Acidisoma cellulosilyticum
full scientific name: Acidisoma cellulosilyticum Mieszkin et al. 2022
strain designation: HW T5.17
type strain: yes
Morphology
multimedia
- @ref: 69108
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_111007.jpg
- caption: DSM 111007; scale bar represents 2 µm
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 69108
- name: DILUTED TRYPTONE SOYA BROTH (TSB) 1:10 (DSMZ Medium 1716)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1716.pdf
culture temp
- @ref: 69108
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 69108
- sample type: decaying oak wood (Quercus petraea)
- geographic location: forest experimental site of Champenoux
- country: France
- origin.country: FRA
- continent: Europe
- latitude: 48.7184
- longitude: 6.3466
Sequence information
16S sequences
- @ref: 20215
- description: Acidisoma cellulosilyticum strain HW T5.17 16S ribosomal RNA gene, partial sequence
- accession: MW463051
- length: 1371
- database: ena
- NCBI tax ID: 2802395
Genome sequences
- @ref: 66792
- description: Acidisoma cellulosilyticum HW T5.17
- accession: GCA_020621385
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2802395
GC content
- @ref: 69108
- GC-content: 62.32
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.682 | no |
| gram-positive | no | 96.993 | no |
| anaerobic | no | 98.513 | no |
| aerobic | yes | 83.815 | no |
| halophile | no | 93.282 | no |
| spore-forming | no | 93.744 | no |
| motile | no | 79.355 | no |
| thermophile | no | 97.904 | yes |
| glucose-util | yes | 92.723 | no |
| glucose-ferment | no | 84.541 | no |
External links
@ref: 20215
culture collection no.: DSM 111007, UBOCC M-3365
literature
- topic: Phylogeny
- Pubmed-ID: 34683374
- title: Acidisoma silvae sp. nov. and Acidisomacellulosilytica sp. nov., Two Acidophilic Bacteria Isolated from Decaying Wood, Hydrolyzing Cellulose and Producing Poly-3-hydroxybutyrate.
- authors: Mieszkin S, Pouder E, Uroz S, Simon-Colin C, Alain K
- journal: Microorganisms
- DOI: 10.3390/microorganisms9102053
- year: 2021
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69108 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111007 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111007) |