Strain identifier
BacDive ID: 168472
Type strain: 
Species: Thiomicrorhabdus heinhorstiae
Strain Designation: HH1
Strain history: <- K.M. Scott, University of South Florida, Tampa, USA; HH1 <- K.M. Scott
NCBI tax ID(s): 2748010 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 168472
DSM-Number: 111584
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Thiomicrorhabdus heinhorstiae HH1 is a mesophilic bacterium that was isolated from chemocline material.
NCBI tax id
- NCBI tax id: 2748010
- Matching level: species
strain history
- @ref: 69194
- history: <- K.M. Scott, University of South Florida, Tampa, USA; HH1 <- K.M. Scott
doi: 10.13145/bacdive168472.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Piscirickettsiaceae
- genus: Thiomicrorhabdus
- species: Thiomicrorhabdus heinhorstiae
- full scientific name: Thiomicrorhabdus heinhorstiae Updegraff et al. 2022
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Thiotrichales
family: Piscirickettsiaceae
genus: Thiomicrorhabdus
species: Thiomicrorhabdus heinhorstiae
full scientific name: Thiomicrorhabdus heinhorstiae Updegraff et al. 2022
strain designation: HH1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 69194
- name: THIOMICROSPIRA PSYCHROPHILA MEDIUM (DSMZ Medium 142a)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium142a.pdf
culture temp
- @ref: 69194
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 69194
- sample type: chemocline material
- geographic location: Florida, Weeki Wachee River, Hospital Hole Cave
- country: USA
- origin.country: USA
- continent: North America
Sequence information
16S sequences
- @ref: 20215
- description: Thiomicrorhabdus heinhorstiae strain HH1 16S ribosomal RNA gene, partial sequence
- accession: MZ029054
- length: 1542
- database: ena
- NCBI tax ID: 2748010
Genome sequences
- @ref: 66792
- description: Thiomicrorhabdus heinhorstiae HH1
- accession: GCA_013391765
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2748010
GC content
- @ref: 69194
- GC-content: 47.8
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 91.668 | no |
| motile | yes | 91.668 | no |
| flagellated | yes | 90.207 | no |
| flagellated | yes | 90.207 | no |
| gram-positive | no | 98.365 | no |
| gram-positive | no | 98.365 | no |
| anaerobic | no | 96.798 | no |
| anaerobic | no | 96.798 | no |
| aerobic | no | 63.567 | no |
| aerobic | no | 63.567 | no |
| halophile | no | 57.549 | no |
| halophile | no | 57.549 | no |
| spore-forming | no | 96.537 | no |
| spore-forming | no | 96.537 | no |
| glucose-util | yes | 72.711 | no |
| glucose-util | yes | 72.711 | no |
| thermophile | no | 93.577 | no |
| thermophile | no | 93.577 | no |
| glucose-ferment | no | 82.22 | no |
| glucose-ferment | no | 82.22 | no |
External links
@ref: 20215
culture collection no.: ATCC TSD-240, DSM 111584
straininfo link
- @ref: 115176
- straininfo: 400286
literature
- topic: Phylogeny
- Pubmed-ID: 35275805
- title: Thiomicrorhabdus heinhorstiae sp. nov. and Thiomicrorhabdus cannonii sp. nov.: novel sulphur-oxidizing chemolithoautotrophs isolated from the chemocline of Hospital Hole, an anchialine sinkhole in Spring Hill, Florida, USA.
- authors: Updegraff T, Schiff-Clark G, Gossett H, Parsi S, Peterson R, Whittaker R, Dennison C, Davis M, Bray J, Boden R, Scott K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.005233
- year: 2022
- mesh: Bacterial Typing Techniques, Base Composition, *DNA, Bacterial/genetics, Fatty Acids/chemistry, Florida, Hospitals, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfur/metabolism
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69194 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111584 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111584) | |
| 115176 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400286.1 |