Strain identifier
BacDive ID: 168331
Type strain: 
Species: Acetoanaerobium noterae
Strain Designation: NOT-3
NCBI tax ID(s): 745369 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 168331
keywords: genome sequence, 16S sequence, Bacteria
description: Acetoanaerobium noterae NOT-3 is a bacterium of the family Peptostreptococcaceae.
NCBI tax id
- NCBI tax id: 745369
- Matching level: species
doi: 10.13145/bacdive168331.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Acetoanaerobium
- species: Acetoanaerobium noterae
- full scientific name: Acetoanaerobium noterae Sleat et al. 1985
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Peptostreptococcaceae
genus: Acetoanaerobium
species: Acetoanaerobium noterae
full scientific name: Acetoanaerobium noterae Sleat et al. 1985
strain designation: NOT-3
type strain: yes
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_1599.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15797;96_907;97_1057;98_1263;99_1599&stattab=map
- Last taxonomy: Acetoanaerobium sticklandii
- 16S sequence: GU562448
- Sequence Identity:
- Total samples: 20854
- soil counts: 1323
- aquatic counts: 13161
- animal counts: 6000
- plant counts: 370
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Acetoanaerobium noterae strain ATCC 35199 16S ribosomal RNA gene, partial sequence
- accession: GU562448
- length: 1415
- database: ena
- NCBI tax ID: 745369
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetoanaerobium noterae ATCC 35199 | GCA_900168025 | scaffold | ncbi | 745369 |
| 66792 | Acetoanaerobium noterae strain ATCC 35199 | 745369.3 | wgs | patric | 745369 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.854 | no |
| flagellated | no | 51.256 | no |
| gram-positive | yes | 72.83 | no |
| anaerobic | yes | 98.476 | no |
| aerobic | no | 95.836 | no |
| halophile | no | 86.57 | no |
| spore-forming | yes | 79.318 | no |
| thermophile | no | 93.751 | no |
| glucose-util | yes | 83.77 | no |
| glucose-ferment | no | 52.851 | no |
External links
@ref: 20215
culture collection no.: ATCC 35199
straininfo link
- @ref: 115150
- straininfo: 40917
literature
- topic: Phylogeny
- Pubmed-ID: 25948619
- title: Acetoanaerobium pronyense sp. nov., an anaerobic alkaliphilic bacterium isolated from a carbonate chimney of the Prony Hydrothermal Field (New Caledonia).
- authors: Bes M, Merrouch M, Joseph M, Quemeneur M, Payri C, Pelletier B, Ollivier B, Fardeau ML, Erauso G, Postec A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000307
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, Carbonates, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Hydrothermal Vents/*microbiology, Molecular Sequence Data, New Caledonia, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 115150 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID40917.1 |