Archive BacDiveID:10.13145/bacdive168328.20230509.8.1

Strain identifier

BacDive ID: 168328

Type strain:

Species: Arcticibacter pallidicorallinus

Strain Designation: Hh36

NCBI tax ID(s): 1259464 (species)

General

@ref: 20215

BacDive-ID: 168328

keywords: genome sequence, 16S sequence, Bacteria

description: Arcticibacter pallidicorallinus Hh36 is a bacterium of the family Sphingobacteriaceae.

NCBI tax id

NCBI tax id: 1259464
Matching level: species

doi: 10.13145/bacdive168328.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Arcticibacter
species: Arcticibacter pallidicorallinus
full scientific name: Arcticibacter pallidicorallinus Liu et al. 2014

@ref: 20215

domain: Bacteria

phylum: Bacteroidota

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Arcticibacter

species: Arcticibacter pallidicorallinus

full scientific name: Arcticibacter pallidicorallinus Liu et al. 2014

strain designation: Hh36

type strain: yes

Isolation, sampling and environmental information

taxonmaps

@ref: 69479
File name: preview.99_33104.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_1702;97_2038;98_24489;99_33104&stattab=map
Last taxonomy: Arcticibacter
16S sequence: JX949238
Sequence Identity:
Total samples: 749
soil counts: 199
aquatic counts: 135
animal counts: 350
plant counts: 65

Safety information

risk assessment

@ref: 20215
biosafety level: 1
biosafety level comment: Risk group

Sequence information

16S sequences

@ref: 20215
description: Arcticibacter pallidicorallinus 16S ribosomal RNA gene, partial sequence
accession: JX949238
length: 1394
database: ena
NCBI tax ID: 1259464

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Arcticibacter pallidicorallinus CGMCC 1.9313	GCA_003002875	contig	ncbi	1259464
66792	Arcticibacter pallidicorallinus strain CGMCC 1.9313	1259464.3	wgs	patric	1259464

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	89.131	no
gram-positive	no	97.304	no
anaerobic	no	97.768	no
aerobic	yes	71.367	no
halophile	no	92.087	no
spore-forming	no	95.951	no
thermophile	no	97.629	no
glucose-util	yes	93.049	no
flagellated	no	96.991	no
glucose-ferment	no	83.28	no

External links

@ref: 20215

culture collection no.: CGMCC 1.9313, KCTC 32542

literature

topic: Phylogeny
Pubmed-ID: 24711590
title: Arcticibacter pallidicorallinus sp. nov. isolated from glacier ice.
authors: Liu Q, Kim SG, Liu HC, Xin YH, Zhou YG
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.061754-0
year: 2014
mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/*microbiology, Molecular Sequence Data, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
topic2: Genetics

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/