Strain identifier
BacDive ID: 168205
Type strain: 
Species: Arenimonas fontis
Strain Designation: 3729k
Strain history: <- T.Kochatkova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 3729K
NCBI tax ID(s): 2608255 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 168205
DSM-Number: 105847
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Arenimonas fontis 3729k is a thermophilic bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 2608255
- Matching level: species
strain history
- @ref: 68526
- history: <- T.Kochatkova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 3729K
doi: 10.13145/bacdive168205.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Arenimonas
- species: Arenimonas fontis
- full scientific name: Arenimonas fontis Zayulina et al. 2020
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Arenimonas
species: Arenimonas fontis
full scientific name: Arenimonas fontis Zayulina et al. 2020
strain designation: 3729k
type strain: yes
Morphology
multimedia
- @ref: 68526
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105847.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 68526 | GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1484.pdf |
| 68526 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
| 68526 | R2A MEDIUM (DSMZ Medium 830) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf |
| 68526 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf |
culture temp
- @ref: 68526
- growth: positive
- type: growth
- temperature: 45
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 68526
- sample type: hot spring
- geographic location: Chukotka Peninsula, Mechigmen spring group (65° 48' 21.09'' N, 173° 23' 46.32'' W)
- country: Russia
- origin.country: RUS
- continent: Europe
taxonmaps
- @ref: 69479
- File name: preview.99_29644.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_14573;97_17781;98_22106;99_29644&stattab=map
- Last taxonomy: Arenimonas fontis subclade
- 16S sequence: MN709218
- Sequence Identity:
- Total samples: 219
- soil counts: 78
- aquatic counts: 37
- animal counts: 94
- plant counts: 10
Sequence information
16S sequences
- @ref: 20215
- description: Arenimonas fontis strain 3729k 16S ribosomal RNA gene, partial sequence
- accession: MN709218
- length: 1467
- database: ena
- NCBI tax ID: 2608255
Genome sequences
- @ref: 66792
- description: Arenimonas fontis 3729k
- accession: GCA_008386465
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2608255
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 82.746 | no |
| flagellated | no | 95.108 | no |
| gram-positive | no | 98.618 | no |
| anaerobic | no | 98.549 | no |
| aerobic | yes | 84.079 | no |
| halophile | no | 91.505 | no |
| spore-forming | no | 98.09 | no |
| glucose-util | yes | 76.459 | no |
| thermophile | no | 94.86 | no |
| glucose-ferment | no | 89.624 | no |
External links
@ref: 20215
culture collection no.: DSM 105847, VKM B-3232, VMK B-3232
straininfo link
- @ref: 115125
- straininfo: 407623
literature
- topic: Phylogeny
- Pubmed-ID: 32176605
- title: Arenimonas fontis sp. nov., a bacterium isolated from Chukotka hot spring, Arctic region, Russia.
- authors: Zayulina KS, Prokofeva MI, Elcheninov AG, Voytova MP, Novikov AA, Kochetkova TV, Kublanov IV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004099
- year: 2020
- mesh: Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Xanthomonadaceae/*classification/isolation & purification
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68526 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105847 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105847) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 115125 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407623.1 |