Strain identifier
BacDive ID: 1680
Type strain: 
Species: Salana multivorans
Strain Designation: Se-3111
Strain history: DSM 13521 <-- F. von Wintzingerode Se-3111.
NCBI tax ID(s): 120377 (species)
version 9.1 (current version)
General
@ref: 5073
BacDive-ID: 1680
DSM-Number: 13521
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive, rod-shaped
description: Salana multivorans Se-3111 is a Gram-positive, rod-shaped bacterium that was isolated from anaerobic, dechlorinating bioreactor cultur enriched from river sediment.
NCBI tax id
- NCBI tax id: 120377
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5073 | <- F. von Wintzingerode; Se-3111 |
| 67770 | DSM 13521 <-- F. von Wintzingerode Se-3111. |
doi: 10.13145/bacdive1680.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Beutenbergiaceae
- genus: Salana
- species: Salana multivorans
- full scientific name: Salana multivorans von Wintzingerode et al. 2001
@ref: 5073
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Beutenbergiaceae
genus: Salana
species: Salana multivorans
full scientific name: Salana multivorans von Wintzingerode et al. 2001
strain designation: Se-3111
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 23153 | positive | 1.2-3.1 µm | 0.4-0.7 µm | rod-shaped | ||
| 69480 | no | 92 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5073 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 5073 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | yes | https://mediadive.dsmz.de/medium/381 | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 5073 | positive | growth | 30 |
| 23153 | positive | optimum | 30-37 |
| 67770 | positive | growth | 28 |
culture pH
- @ref: 23153
- ability: positive
- type: optimum
- pH: 7.5
Physiology and metabolism
murein
- @ref: 5073
- murein short key: A23.01
- type: A4ß L-Orn-L-Glu; position 1 of the peptid subunit is L-Ser
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 5073 | anaerobic, dechlorinating bioreactor cultur enriched from river sediment | Germany | DEU | Europe | |
| 23153 | from an dechlorinating consortium enriched from river sediment | River Saale | |||
| 67770 | Anaerobic, trichlorobenzene-dechlorinating consortium enriched from sediment of the River Saale | Germany | DEU | Europe | near Jena |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioreactor | |
| #Condition | #Anoxic (anaerobic) | |
| #Engineered | #Laboratory | #Lab enrichment |
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_82548.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1152;97_43849;98_57332;99_82548&stattab=map
- Last taxonomy: Salana multivorans subclade
- 16S sequence: AJ400627
- Sequence Identity:
- Total samples: 158
- soil counts: 17
- aquatic counts: 87
- animal counts: 51
- plant counts: 3
Safety information
risk assessment
- @ref: 5073
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5073
- description: Salana multivorans 16S rRNA gene, strain Se-3111
- accession: AJ400627
- length: 1447
- database: nuccore
- NCBI tax ID: 120377
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salana multivorans strain DSM 13521 | 120377.3 | wgs | patric | 120377 |
| 66792 | Salana multivorans DSM 13521 | 2781126055 | draft | img | 120377 |
| 67770 | Salana multivorans DSM 13521 | GCA_003751805 | contig | ncbi | 120377 |
GC content
- @ref: 5073
- GC-content: 75
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.134 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.46 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 79.675 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 68.591 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 92 | no |
External links
@ref: 5073
culture collection no.: DSM 13521, JCM 13524, NBRC 104395, NRRL B-24118
straininfo link
- @ref: 71327
- straininfo: 49481
literature
- topic: Phylogeny
- Pubmed-ID: 11594592
- title: Salana multivorans gen. nov., sp. nov., a novel actinobacterium isolated from an anaerobic bioreactor and capable of selenate reduction.
- authors: von Wintzingerode F, Gobel UB, Siddiqui RA, Rosick U, Schumann P, Fruhling A, Rohde M, Pukall R, Stackebrandt E
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-51-5-1653
- year: 2001
- mesh: Actinobacteria/*classification/genetics/*growth & development/isolation & purification/metabolism, Anaerobiosis, *Bioreactors, Cell Wall/chemistry, Culture Media, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Geologic Sediments/microbiology, Lipids/analysis, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Selenic Acid, Selenium Compounds/*metabolism, Sequence Analysis, DNA
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5073 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13521) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13521 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 23153 | F von Wintzingerode, U B Gobel, R A Siddiqui, U Rösick, P Schumann, A Frühling, M Rohde, R Pukall, E Stackebrandt | 10.1099/00207713-51-5-1653 | Salana multivorans gen. nov., sp. nov., a novel actinobacterium isolated from an anaerobic bioreactor and capable of selenate reduction | IJSEM 51: 1653-1661 2001 | 11594592 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 71327 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49481.1 | StrainInfo: A central database for resolving microbial strain identifiers |