Strain identifier
BacDive ID: 16799
Type strain: 
Species: Tepidanaerobacter syntrophicus
Strain Designation: JE
Strain history: Y. Sekiguchi JE.
NCBI tax ID(s): 224999 (species)
version 8.1 (current version)
General
@ref: 5907
BacDive-ID: 16799
DSM-Number: 15585
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Tepidanaerobacter syntrophicus JE is an anaerobe, thermophilic bacterium that was isolated from thermophilic anaerobic digested sewage sludge.
NCBI tax id
- NCBI tax id: 224999
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5907 | <- Y. Sekiguchi, AIST Tsukuba, Japan; JE |
| 67770 | Y. Sekiguchi JE. |
doi: 10.13145/bacdive16799.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermosediminibacterales
- family: Tepidanaerobacteraceae
- genus: Tepidanaerobacter
- species: Tepidanaerobacter syntrophicus
- full scientific name: Tepidanaerobacter syntrophicus Sekiguchi et al. 2006
@ref: 5907
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Thermoanaerobacterales
family: Tepidanaerobacteraceae
genus: Tepidanaerobacter
species: Tepidanaerobacter syntrophicus
full scientific name: Tepidanaerobacter syntrophicus Sekiguchi et al. 2006
strain designation: JE
type strain: no
Culture and growth conditions
culture medium
- @ref: 5907
- name: TEPIDANAEROBACTER MEDIUM (DSMZ Medium 1051)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1051
- composition: Name: TEPIDANAEROBACTER MEDIUM (DSMZ Medium 1051) Composition: Yeast extract 2.3 g/l D-Glucose 2.2 g/l Na2CO3 1.5 g/l NH4Cl 0.54 g/l Na2S x 9 H2O 0.3 g/l L-Cysteine HCl x H2O 0.3 g/l MgCl2 x 6 H2O 0.2 g/l KH2PO4 0.14 g/l Nitrilotriacetic acid 0.0128 g/l NaCl 0.001 g/l Sodium resazurin 0.0005 g/l FeCl2 x 4 H2O 0.0002 g/l CoCl2 x 6 H2O 0.00017 g/l CaCl2 x 2 H2O 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 0.0001 g/l Na2SeO3 x 5 H2O 3e-05 g/l NiCl2 x 6 H2O 3e-05 g/l CuCl2 2e-05 g/l Pyridoxine hydrochloride 2e-05 g/l Na2MoO4 x 2 H2O 1e-05 g/l Riboflavin 1e-05 g/l Thiamine HCl 1e-05 g/l (DL)-alpha-Lipoic acid 1e-05 g/l p-Aminobenzoic acid 1e-05 g/l Nicotinic acid 1e-05 g/l Calcium D-(+)-pantothenate 1e-05 g/l H3BO3 1e-05 g/l Folic acid 4e-06 g/l Biotin 4e-06 g/l Vitamin B12 2e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5907 | positive | growth | 45 | thermophilic |
| 67770 | positive | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 5907
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5907 | thermophilic anaerobic digested sewage sludge | Niigata | Japan | JPN | Asia |
| 67770 | Sludge from a thermophilic digester decomposing municipal solid waste |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Anaerobic digestor |
| #Engineered | #Waste | #Sewage sludge |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_8140.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_560;96_3755;97_4617;98_5926;99_8140&stattab=map
- Last taxonomy: Tepidanaerobacter syntrophicus subclade
- 16S sequence: AB106352
- Sequence Identity:
- Total samples: 417
- soil counts: 31
- aquatic counts: 274
- animal counts: 60
- plant counts: 52
Safety information
risk assessment
- @ref: 5907
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5907
- description: Tepidanaerobacter syntrophicus gene for 16S rRNA, partial sequence, strain: JE
- accession: AB106352
- length: 1451
- database: ena
- NCBI tax ID: 224999
GC content
- @ref: 67770
- GC-content: 37.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 5907
culture collection no.: DSM 15585, JCM 12099, NBRC 100061
straininfo link
- @ref: 85815
- straininfo: 301473
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5907 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15585) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15585 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85815 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID301473.1 | StrainInfo: A central database for resolving microbial strain identifiers |