Strain identifier
BacDive ID: 167784
Type strain: 
Species: Bartonella bacilliformis
Strain Designation: Herrer 020/F12,63, KC583
NCBI tax ID(s): 774 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 167784
keywords: genome sequence, 16S sequence, Bacteria
description: Bartonella bacilliformis Herrer 020/F12 is a bacterium of the family Bartonellaceae.
NCBI tax id
- NCBI tax id: 774
- Matching level: species
doi: 10.13145/bacdive167784.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Bartonellaceae
- genus: Bartonella
- species: Bartonella bacilliformis
- full scientific name: Bartonella bacilliformis (Strong et al. 1913) Strong et al. 1915 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bartonia bacilliformis
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Bartonellaceae
genus: Bartonella
species: Bartonella bacilliformis
full scientific name: Bartonella bacilliformis (Strong et al. 1913) Strong et al. 1915 (Approved Lists 1980)
strain designation: Herrer 020/F12,63, KC583
type strain: yes
Safety information
risk assessment
- @ref: 20215
- biosafety level: 2
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: B.bacilliformis 16S rRNA gene
- accession: Z11683
- length: 1410
- database: ena
- NCBI tax ID: 774
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bartonella bacilliformis KC583 KC583; ATCC 35685 | GCA_000015445 | complete | ncbi | 360095 |
| 66792 | Bartonella bacilliformis KC583 | 360095.6 | complete | patric | 360095 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 53.388 | no |
| flagellated | no | 91.91 | no |
| gram-positive | no | 98.896 | no |
| anaerobic | no | 97.856 | no |
| halophile | no | 65.382 | no |
| spore-forming | no | 97.297 | no |
| thermophile | no | 81.309 | no |
| glucose-util | no | 50 | no |
| aerobic | no | 95.647 | no |
| glucose-ferment | no | 74.421 | no |
External links
@ref: 20215
culture collection no.: ATCC 35685
straininfo link
- @ref: 115020
- straininfo: 10283
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 1715879 | Molecular characterization and proposal of a neotype strain for Bartonella bacilliformis. | Brenner DJ, O'Connor SP, Hollis DG, Weaver RE, Steigerwalt AG | J Clin Microbiol | 10.1128/jcm.29.7.1299-1302.1991 | 1991 | Bartonella/classification/*genetics/pathogenicity, Bartonella Infections/microbiology, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Nucleic Acid Hybridization, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Pathogenicity |
| Enzymology | 7890422 | Characterization of a two-gene locus from Bartonella bacilliformis associated with the ability to invade human erythrocytes. | Mitchell SJ, Minnick MF | Infect Immun | 10.1128/iai.63.4.1552-1562.1995 | 1995 | Amino Acid Sequence, Bartonella/*genetics, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Erythrocytes/*microbiology, Genes, Bacterial, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Restriction Mapping, Sequence Alignment, Sequence Homology, Amino Acid, Transformation, Genetic | Pathogenicity |
| Metabolism | 32738366 | In silico analysis of Pap31 from Bartonella bacilliformis and other Bartonella spp. | Ruiz J, Gomes C | Infect Genet Evol | 10.1016/j.meegid.2020.104482 | 2020 | Amino Acid Sequence, Antigens, Bacterial/genetics/*metabolism, Bartonella bacilliformis/genetics/*metabolism, Base Sequence, *Computer Simulation, DNA, Bacterial/genetics, Gene Expression Regulation, Bacterial/*physiology, Humans, Species Specificity | Pathogenicity |
| Metabolism | 35544109 | Identification of immunodominant Bartonella bacilliformis proteins: a combined in-silico and serology approach. | Dichter AA, Schultze TG, Wenigmann A, Ballhorn W, Latz A, Schlufter E, Ventosilla P, Guerra Allison H, Ugarte-Gil C, Tsukayama P, Kempf VAJ | Lancet Microbe | 10.1016/S2666-5247(21)00184-1 | 2021 | *Bartonella Infections/diagnosis, *Bartonella bacilliformis/genetics, Humans, Immunodominant Epitopes/metabolism, Porins/metabolism, Type V Secretion Systems/metabolism | Pathogenicity |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 115020 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID10283.1 |