Strain identifier
BacDive ID: 167604
Type strain: 
Species: Nitrosopumilus zosterae
Strain Designation: NM25
NCBI tax ID(s): 718286 (species)
version 9 (current version)
General
@ref: 20215
BacDive-ID: 167604
keywords: 16S sequence, Archaea
description: Nitrosopumilus zosterae NM25 is an archaeon of the family Nitrosopumilaceae.
NCBI tax id
- NCBI tax id: 718286
- Matching level: species
doi: 10.13145/bacdive167604.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/nitrososphaerota
- domain: Archaea
- phylum: Nitrososphaerota
- class: Nitrososphaeria
- order: Nitrosopumilales
- family: Nitrosopumilaceae
- genus: Nitrosopumilus
- species: Nitrosopumilus zosterae
- full scientific name: Nitrosopumilus zosterae Nakagawa et al. 2021
@ref: 20215
domain: Archaea
phylum: Nitrososphaerota
class: Nitrososphaeria
order: Nitrosopumilales
family: Nitrosopumilaceae
genus: Nitrosopumilus
species: Nitrosopumilus zosterae
full scientific name: Nitrosopumilus zosterae Nakagawa et al. 2021
strain designation: NM25
type strain: yes
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_187113.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17653;96_68790;97_89432;98_121702;99_187113&stattab=map
- Last taxonomy: Nitrosopumilus
- 16S sequence: LC571517
- Sequence Identity:
- Total samples: 62
- soil counts: 2
- aquatic counts: 60
Sequence information
16S sequences
- @ref: 20215
- description: Nitrosopumilus zosterae NM25 gene for 16S ribosomal RNA, partial sequence
- accession: LC571517
- length: 1465
- database: nuccore
- NCBI tax ID: 718286
External links
@ref: 20215
culture collection no.: NBRC 111181, ATCC TSD-147
literature
- topic: Phylogeny
- Pubmed-ID: 34406920
- title: Nitrosopumilus zosterae sp. nov., an autotrophic ammonia-oxidizing archaeon of phylum Thaumarchaeota isolated from coastal eelgrass sediments of Japan.
- authors: Nakagawa T, Koji M, Hosoyama A, Yamazoe A, Tsuchiya Y, Ueda S, Takahashi R, Stahl DA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004961
- year: 2021
- mesh: *Ammonia, *Archaea/classification/isolation & purification, Genes, Archaeal, Geologic Sediments/*microbiology, Japan, Nucleic Acid Hybridization, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Wetlands
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |