Strain identifier

BacDive ID: 167566

Type strain: Yes

Species: Enterobacter oligotrophicus

Strain Designation: CCA6

NCBI tax ID(s): 2478464 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20215

BacDive-ID: 167566

keywords: genome sequence, 16S sequence, Bacteria

description: Enterobacter oligotrophicus CCA6 is a bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 2478464
  • Matching level: species

doi: 10.13145/bacdive167566.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter oligotrophicus
  • full scientific name: Enterobacter oligotrophicus corrig. Akita et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter oligotrophica

@ref: 20215

domain: Bacteria

phylum: Pseudomonadota

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter oligotrophicus

full scientific name: Enterobacter oligotrophicus Akita et al. 2020

strain designation: CCA6

type strain: yes

Sequence information

16S sequences

  • @ref: 20215
  • description: Enterobacter oligotrophicus CCA6 gene for 16S ribosomal RNA, partial sequence
  • accession: LC368255
  • length: 1537
  • database: ena
  • NCBI tax ID: 2478464

Genome sequences

  • @ref: 66792
  • description: Enterobacter oligotrophicus CCA6
  • accession: GCA_009176645
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 2478464

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.826no
flagellatedno62.115no
gram-positiveno98.352no
anaerobicno97.236no
aerobicyes87.842no
halophileno85.988no
spore-formingno94.747no
thermophileno99.31no
glucose-utilyes95.918no
glucose-fermentyes94.543no

External links

@ref: 20215

culture collection no.: KCTC 62525, HUT 8142

literature

  • topic: Phylogeny
  • Pubmed-ID: 31066221
  • title: Enterobacter oligotrophica sp. nov., a novel oligotroph isolated from leaf soil.
  • authors: Akita H, Matsushika A, Kimura ZI
  • journal: Microbiologyopen
  • DOI: 10.1002/mbo3.843
  • year: 2019
  • mesh: Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enterobacter/*classification/genetics/growth & development/*isolation & purification, Fatty Acids/analysis, Hydrogen-Ion Concentration, Japan, Locomotion, Multilocus Sequence Typing, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Temperature
  • topic2: Enzymology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes