Strain identifier
BacDive ID: 167496
Type strain: 
Species: Reticulibacter mediterranei
Strain Designation: 150040, ID150040
NCBI tax ID(s): 2778369 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 167496
DSM-Number: 111116
keywords: genome sequence, Bacteria
description: Reticulibacter mediterranei 150040 is a bacterium of the family Reticulibacteraceae.
NCBI tax id
- NCBI tax id: 2778369
- Matching level: species
doi: 10.13145/bacdive167496.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chloroflexota
- domain: Bacteria
- phylum: Chloroflexota
- class: Ktedonobacteria
- order: Ktedonobacterales
- family: Reticulibacteraceae
- genus: Reticulibacter
- species: Reticulibacter mediterranei
- full scientific name: Reticulibacter mediterranei Yabe et al. 2021
@ref: 20215
domain: Bacteria
phylum: Chloroflexota
class: Ktedonobacteria
order: Ktedonobacterales
family: Reticulibacteraceae
genus: Reticulibacter
species: Reticulibacter mediterranei
full scientific name: Reticulibacter mediterranei Yabe et al. 2021
strain designation: 150040, ID150040
type strain: yes
Morphology
multimedia
- @ref: 68772
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_111116.jpg
- caption: Medium 987 pH5.5 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 68772 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
| 68772 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf |
| 68772 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf |
culture temp
- @ref: 68772
- growth: positive
- type: growth
- temperature: 28
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Reticulibacter mediterranei 150040 | GCA_016587455 | contig | ncbi | 2778369 |
| 66792 | Ktedonobacterales bacterium ID150040 | 2778369.3 | wgs | patric | 2778369 |
GC content
- @ref: 68772
- GC-content: 52
- method: sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 74.993 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.85 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 69.169 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 79.476 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 84.71 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 79.438 | no |
External links
@ref: 20215
culture collection no.: CGMCC 1.17052, BCRC 81202, DSM 111116
straininfo link
- @ref: 114958
- straininfo: 404555
literature
- topic: Phylogeny
- Pubmed-ID: 34296987
- title: Reticulibacter mediterranei gen. nov., sp. nov., within the new family Reticulibacteraceae fam. nov., and Ktedonospora formicarum gen. nov., sp. nov., Ktedonobacter robiniae sp. nov., Dictyobacter formicarum sp. nov. and Dictyobacter arantiisoli sp. nov., belonging to the class Ktedonobacteria.
- authors: Yabe S, Zheng Y, Wang CM, Sakai Y, Abe K, Yokota A, Donadio S, Cavaletti L, Monciardini P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004883
- year: 2021
- mesh: Bacterial Typing Techniques, Base Composition, Chloroflexi/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68772 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-111116 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111116) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 114958 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404555.1 |