Strain identifier
BacDive ID: 167475
Type strain: 
Species: Apilactobacillus bombintestini
Strain Designation: BHWM-4
NCBI tax ID(s): 2419772 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 167475
keywords: genome sequence, 16S sequence, Bacteria
description: Apilactobacillus bombintestini BHWM-4 is a bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 2419772
- Matching level: species
doi: 10.13145/bacdive167475.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Apilactobacillus
- species: Apilactobacillus bombintestini
- full scientific name: Apilactobacillus bombintestini (Heo et al. 2020) Mattarelli et al. 2021
synonyms
- @ref: 20215
- synonym: Lactobacillus bombintestini
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Apilactobacillus
species: Apilactobacillus bombintestini
full scientific name: Apilactobacillus bombintestini (Heo et al. 2020) Mattarelli et al. 2021
strain designation: BHWM-4
type strain: yes
Sequence information
16S sequences
- @ref: 20215
- description: Apilactobacillus bombintestini strain BHWM-4 chromosome, complete genome
- accession: CP032626
- length: 1289211
- database: ena
- NCBI tax ID: 2419772
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Apilactobacillus bombintestini BHWM-4 | GCA_003627035 | complete | ncbi | 2419772 |
| 66792 | Lactobacillus sp. BHWM-4 | 2419772.3 | complete | patric | 2419772 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 95.539 | no |
| flagellated | no | 98.977 | no |
| gram-positive | yes | 93.354 | no |
| anaerobic | no | 81.791 | no |
| aerobic | no | 97.619 | no |
| halophile | yes | 88.123 | no |
| spore-forming | no | 96.591 | no |
| glucose-util | yes | 88.267 | no |
| thermophile | no | 97.435 | no |
| glucose-ferment | yes | 86.805 | no |
External links
@ref: 20215
culture collection no.: KACC 19317, NBRC 113067
literature
- topic: Phylogeny
- Pubmed-ID: 32222941
- title: Comparative genomics of Lactobacillus species as bee symbionts and description of Lactobacillus bombintestini sp. nov., isolated from the gut of Bombus ignitus.
- authors: Heo J, Kim SJ, Kim JS, Hong SB, Kwon SW
- journal: J Microbiol
- DOI: 10.1007/s12275-020-9596-3
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Bees/*microbiology, DNA, Bacterial/genetics, *Gastrointestinal Microbiome, Genomics, Lactobacillus/*classification/genetics/*isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |