Strain identifier
BacDive ID: 16705
Type strain: 
Species: Meiothermus taiwanensis
Strain Designation: WR-30
Strain history: <- M.-Y. Chen; WR-30
NCBI tax ID(s): 1122222 (strain), 172827 (species)
version 8.1 (current version)
General
@ref: 5289
BacDive-ID: 16705
DSM-Number: 14542
keywords: genome sequence, 16S sequence, Bacteria, thermophilic, Gram-negative
description: Meiothermus taiwanensis WR-30 is a thermophilic, Gram-negative bacterium that was isolated from hot springs.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 172827 | species |
| 1122222 | strain |
strain history
- @ref: 5289
- history: <- M.-Y. Chen; WR-30
doi: 10.13145/bacdive16705.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Thermales
- family: Thermaceae
- genus: Meiothermus
- species: Meiothermus taiwanensis
- full scientific name: Meiothermus taiwanensis Chen et al. 2002
@ref: 5289
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Thermales
family: Thermaceae
genus: Meiothermus
species: Meiothermus taiwanensis
full scientific name: Meiothermus taiwanensis Chen et al. 2002
strain designation: WR-30
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.95
Culture and growth conditions
culture medium
- @ref: 5289
- name: MODIFIED CASTENHOLZ MEDIUM (DSMZ Medium 86a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/86a
- composition: Name: MODIFIED CASTENHOLZ MEDIUM (DSMZ Medium 86a) Composition: Agar 25.0 g/l Peptone 3.0 g/l Monosodium glutamate 1.0 g/l Yeast extract 1.0 g/l NaNO3 0.689 g/l Na2HPO4 x 2 H2O 0.14 g/l KNO3 0.103 g/l Nitrilotriacetic acid 0.1 g/l MgSO4 x 7 H2O 0.1 g/l CaSO4 x 2 H2O 0.06 g/l NaCl 0.008 g/l MnSO4 x H2O 0.0022 g/l H3BO3 0.0005 g/l ZnSO4 x 7 H2O 0.0005 g/l FeCl3 x 6 H2O 0.00047 g/l CoCl2 x 6 H2O 4.6e-05 g/l CuSO4 x 5 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 5289 | positive | growth | 55 | thermophilic | |
| 69480 | thermophilic | 96.65 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.99 |
Isolation, sampling and environmental information
isolation
- @ref: 5289
- sample type: hot springs
- geographic location: Taipei, Wu-Rai
- country: Taiwan
- origin.country: TWN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 5289
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5289
- description: Meiothermus taiwanensis strain WR-30T 16S ribosomal RNA gene, partial sequence
- accession: AF418001
- length: 1483
- database: ena
- NCBI tax ID: 172827
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Meiothermus taiwanensis DSM 14542 | 1122222.3 | wgs | patric | 1122222 |
| 66792 | Meiothermus taiwanensis DSM 14542 | 2528768209 | draft | img | 1122222 |
GC content
- @ref: 5289
- GC-content: 61.9
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 88.314 | no |
| flagellated | no | 94.048 | no |
| gram-positive | no | 93.062 | no |
| anaerobic | no | 96.841 | no |
| aerobic | yes | 88.74 | no |
| halophile | no | 91.049 | no |
| spore-forming | no | 93.98 | no |
| thermophile | yes | 99.714 | yes |
| glucose-util | yes | 82.923 | no |
| glucose-ferment | no | 91.287 | no |
External links
@ref: 5289
culture collection no.: DSM 14542, ATCC BAA 399, CCRC 17170
straininfo link
- @ref: 85724
- straininfo: 100742
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12361269 | Meiothermus taiwanensis sp. nov., a novel filamentous, thermophilic species isolated in Taiwan. | Chen MY, Lin GH, Lin YT, Tsay SS | Int J Syst Evol Microbiol | 10.1099/00207713-52-5-1647 | 2002 | Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Deinococcus/*classification/genetics/*isolation & purification/metabolism, Fatty Acids/analysis, Fresh Water/microbiology, Hot Temperature, Lipids/analysis, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Taiwan, Terminology as Topic | Stress |
| Phylogeny | 28792366 | Meiothermus luteus sp. nov., a slightly thermophilic bacterium isolated from a hot spring. | Habib N, Khan IU, Hussain F, Zhou EM, Xiao M, Dong L, Zhi XY, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002040 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/isolation & purification, Hot Springs/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5289 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14542) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14542 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 85724 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100742.1 | StrainInfo: A central database for resolving microbial strain identifiers |