Strain identifier
BacDive ID: 16698
Type strain: 
Species: Fervidicola ferrireducens
Strain Designation: Y170
Strain history: C. D. Ogg and B. K. C. Patel Y170.
NCBI tax ID(s): 520764 (species)
version 8.1 (current version)
General
@ref: 15560
BacDive-ID: 16698
DSM-Number: 21121
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, Gram-negative, motile, rod-shaped
description: Fervidicola ferrireducens Y170 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from microbial mats in a runoff channel.
NCBI tax id
- NCBI tax id: 520764
- Matching level: species
strain history
| @ref | history |
|---|---|
| 15560 | <- C. Ogg, Griffith Univ., Nathan Campus, Australia; Y170 <- C. Ogg {2007} |
| 67770 | C. D. Ogg and B. K. C. Patel Y170. |
doi: 10.13145/bacdive16698.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermosediminibacterales
- family: Thermosediminibacteraceae
- genus: Fervidicola
- species: Fervidicola ferrireducens
- full scientific name: Fervidicola ferrireducens Ogg and Patel 2009
@ref: 15560
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Thermosediminibacteraceae
genus: Fervidicola
species: Fervidicola ferrireducens
full scientific name: Fervidicola ferrireducens Ogg and Patel 2009
strain designation: Y170
type strain: yes
Morphology
cell morphology
- @ref: 29019
- gram stain: negative
- cell length: 6.6 µm
- cell width: 0.95 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29019
- production: yes
Culture and growth conditions
culture medium
- @ref: 15560
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15560 | positive | growth | 70 | thermophilic |
| 29019 | positive | growth | 55-80 | hyperthermophilic |
| 29019 | positive | optimum | 70 | thermophilic |
| 67770 | positive | growth | 70 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29019 | positive | growth | 05-09 | alkaliphile |
| 29019 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 15560 | anaerobe |
| 29019 | anaerobe |
spore formation
- @ref: 29019
- spore formation: no
halophily
- @ref: 29019
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <2 %
observation
- @ref: 29019
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29019 | 30089 | acetate | + | carbon source |
| 29019 | 17057 | cellobiose | + | carbon source |
| 29019 | 16236 | ethanol | + | carbon source |
| 29019 | 15740 | formate | + | carbon source |
| 29019 | 28757 | fructose | + | carbon source |
| 29019 | 28260 | galactose | + | carbon source |
| 29019 | 17234 | glucose | + | carbon source |
| 29019 | 29864 | mannitol | + | carbon source |
| 29019 | 37684 | mannose | + | carbon source |
| 29019 | 15361 | pyruvate | + | carbon source |
| 29019 | 17992 | sucrose | + | carbon source |
| 29019 | 26986 | threonine | + | carbon source |
| 29019 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15560 | microbial mats in a runoff channel | Queensland, Great Artesian Basin | Australia | AUS | Australia and Oceania |
| 67770 | Microbial mats colonizing a runoff channel formed by free-flowing thermal water from a Great Artesian Basin, bore well | Australia | AUS | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Environmental | #Microbial community | #Microbial mat |
Safety information
risk assessment
- @ref: 15560
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15560
- description: Fervidicola ferrireducens strain Y170 16S ribosomal RNA gene, partial sequence
- accession: EU443728
- length: 1528
- database: ena
- NCBI tax ID: 520764
Genome sequences
- @ref: 67770
- description: Fervidicola ferrireducens Y170
- accession: GCA_001562425
- assembly level: contig
- database: ncbi
- NCBI tax ID: 520764
GC content
| @ref | GC-content | method |
|---|---|---|
| 15560 | 48 | thermal denaturation, midpoint method (Tm) |
| 29019 | 48 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 88.94 | no |
| gram-positive | no | 88.639 | yes |
| anaerobic | yes | 99.439 | yes |
| aerobic | no | 97.338 | no |
| halophile | no | 92.364 | no |
| spore-forming | no | 51.118 | yes |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 87.708 | no |
| motile | yes | 88.073 | yes |
| glucose-ferment | yes | 58.076 | no |
External links
@ref: 15560
culture collection no.: DSM 21121, JCM 15106, KCTC 5610
straininfo link
- @ref: 85717
- straininfo: 398067
literature
- topic: Phylogeny
- Pubmed-ID: 19406800
- title: Fervidicola ferrireducens gen. nov., sp. nov., a thermophilic anaerobic bacterium from geothermal waters of the Great Artesian Basin, Australia.
- authors: Ogg CD, Patel BK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.004200-0
- year: 2009
- mesh: Australia, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fresh Water/*microbiology, Genes, rRNA, Gram-Negative Anaerobic Bacteria/*classification/genetics/isolation & purification/physiology, *Hot Temperature, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
- topic2: Stress
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 15560 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21121) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21121 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 29019 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25449 | 28776041 | ||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 85717 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398067.1 | StrainInfo: A central database for resolving microbial strain identifiers |