Strain identifier
BacDive ID: 166861
Type strain: 
Species: Companilactobacillus formosensis
Strain Designation: S215
NCBI tax ID(s): 1617889 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 166861
keywords: genome sequence, 16S sequence, Bacteria
description: Companilactobacillus formosensis S215 is a bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1617889
- Matching level: species
doi: 10.13145/bacdive166861.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Companilactobacillus
- species: Companilactobacillus formosensis
- full scientific name: Companilactobacillus formosensis (Chang et al. 2015) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus formosensis
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Companilactobacillus
species: Companilactobacillus formosensis
full scientific name: Companilactobacillus formosensis (Chang et al. 2015) Zheng et al. 2020
strain designation: S215
type strain: yes
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_5978.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_954;97_1113;98_1324;99_5978&stattab=map
- Last taxonomy: Lactobacillaceae
- 16S sequence: AB794060
- Sequence Identity:
- Total samples: 3707
- soil counts: 237
- aquatic counts: 342
- animal counts: 2894
- plant counts: 234
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Lactobacillus formosensis gene for 16S ribosomal RNA, partial sequence
- accession: AB794060
- length: 1533
- database: ena
- NCBI tax ID: 1617889
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Companilactobacillus formosensis S215 | GCA_003573535 | scaffold | ncbi | 1617889 |
| 66792 | Companilactobacillus formosensis NBRC 109509 | GCA_005405305 | scaffold | ncbi | 1617889 |
| 66792 | Lactobacillus formosensis strain S215 | 1617889.3 | wgs | patric | 1617889 |
| 66792 | Lactobacillus formosensis strain NBRC 109509 | 1617889.4 | wgs | patric | 1617889 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 95.03 | no |
| flagellated | no | 97.307 | no |
| gram-positive | yes | 94.695 | no |
| anaerobic | no | 90.973 | no |
| aerobic | no | 96.979 | no |
| halophile | yes | 89.692 | no |
| spore-forming | no | 93.921 | no |
| glucose-util | yes | 89.982 | no |
| thermophile | no | 99.581 | no |
| glucose-ferment | yes | 87.054 | no |
External links
@ref: 20215
culture collection no.: NBRC 109509, BCRC 80582
straininfo link
- @ref: 114856
- straininfo: 396479
literature
- topic: Phylogeny
- Pubmed-ID: 25281727
- title: Lactobacillus formosensis sp. nov., a lactic acid bacterium isolated from fermented soybean meal.
- authors: Chang CH, Chen YS, Lee TT, Chang YC, Yu B
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.070938-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Fermentation, Genes, Bacterial, Lactic Acid, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soybeans/*microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 114856 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396479.1 |