Strain identifier
BacDive ID: 166780
Type strain: 
Species: Perlabentimonas gracilis
Strain Designation: M08_MB
Strain history: <- M. Khomyakova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; M08_MB
NCBI tax ID(s): 2715279 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 166780
DSM-Number: 110720
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Perlabentimonas gracilis M08_MB is a mesophilic bacterium of the family Tenuifilaceae.
NCBI tax id
- NCBI tax id: 2715279
- Matching level: species
strain history
- @ref: 69112
- history: <- M. Khomyakova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; M08_MB
doi: 10.13145/bacdive166780.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Tenuifilaceae
- genus: Perlabentimonas
- species: Perlabentimonas gracilis
- full scientific name: Perlabentimonas gracilis Khomyakova et al. 2022
@ref: 20215
domain: Bacteria
phylum: Bacteroidota
class: Bacteroidia
order: Bacteroidales
family: Tenuifilaceae
genus: Perlabentimonas
species: Perlabentimonas gracilis
full scientific name: Perlabentimonas gracilis Khomyakova et al. 2022
strain designation: M08_MB
type strain: yes
Culture and growth conditions
culture medium
- @ref: 69112
- name: PELLABORIMONAS MEDIUM (DSMZ Medium 1717)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1717.pdf
culture temp
- @ref: 69112
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_120731.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2197;96_9593;97_61133;98_81319;99_120731&stattab=map
- Last taxonomy: Tenuifilaceae
- 16S sequence: MT501785
- Sequence Identity:
- Total samples: 275
- soil counts: 5
- aquatic counts: 137
- animal counts: 112
- plant counts: 21
Sequence information
16S sequences
- @ref: 20215
- description: Perlabentimonas gracilis strain M08_MB 16S ribosomal RNA gene, partial sequence
- accession: MT501785
- length: 1475
- database: ena
- NCBI tax ID: 2715279
Genome sequences
- @ref: 66792
- description: Perlabentimonas gracilis M08_MB
- accession: GCA_011174675
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2715279
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 79.445 | no |
| flagellated | no | 94.914 | no |
| gram-positive | no | 97.805 | no |
| anaerobic | yes | 91.032 | no |
| aerobic | no | 94.566 | no |
| halophile | no | 64.781 | no |
| spore-forming | no | 95.612 | no |
| thermophile | no | 83.739 | no |
| glucose-util | yes | 89.963 | no |
| glucose-ferment | no | 61.236 | no |
External links
@ref: 20215
culture collection no.: VKM B-3471, DSM 110720
straininfo link
- @ref: 114843
- straininfo: 404087
literature
- topic: Phylogeny
- Pubmed-ID: 34392063
- title: Perlabentimonas gracilis gen. nov., sp. nov., a gliding aerotolerant anaerobe of the order Bacteroidales, isolated from a terrestrial mud volcano.
- authors: Khomyakova MA, Merkel AY, Slobodkin AI
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2021.126245
- year: 2021
- mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, *Soil Microbiology, Volcanic Eruptions
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69112 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110720 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110720) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 114843 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404087.1 |