Strain identifier

BacDive ID: 16656

Type strain: Yes

Species: Sulfurisphaera tokodaii

Strain Designation: 7

Strain history: T. Oshima 7.

NCBI tax ID(s): 111955 (species)

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General

@ref: 6596

BacDive-ID: 16656

DSM-Number: 16993

keywords: genome sequence, Archaea, thermophilic

description: Sulfurisphaera tokodaii 7 is a thermophilic archaeon that was isolated from hot springs.

NCBI tax id

  • NCBI tax id: 111955
  • Matching level: species

strain history

@refhistory
6596<- JCM <- T. Oshima, Tokyo Institute of Technology, Yokohama, Japan; 7
67770T. Oshima 7.

doi: 10.13145/bacdive16656.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/thermoproteota
  • domain: Archaea
  • phylum: Thermoproteota
  • class: Thermoprotei
  • order: Sulfolobales
  • family: Sulfolobaceae
  • genus: Sulfurisphaera
  • species: Sulfurisphaera tokodaii
  • full scientific name: Sulfurisphaera tokodaii (Suzuki et al. 2002) Tsuboi et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Sulfolobus tokodaii

@ref: 6596

domain: Archaea

phylum: Crenarchaeota

class: Thermoprotei

order: Sulfolobales

family: Sulfolobaceae

genus: Sulfurisphaera

species: Sulfurisphaera tokodaii

full scientific name: Sulfurisphaera tokodaii (Suzuki et al. 2002) Tsuboi et al. 2018

strain designation: 7

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6596
  • name: SULFOLOBUS MEDIUM (DSMZ Medium 88)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/88
  • composition: Name: SULFOLOBUS MEDIUM (DSMZ Medium 88; with strain-specific modifications) Composition: (NH4)2SO4 1.28713 g/l D-Glucose 0.990099 g/l Casamino acids 0.990099 g/l Yeast extract 0.990099 g/l KH2PO4 0.277228 g/l MgSO4 x 7 H2O 0.247525 g/l CaCl2 x 2 H2O 0.0693069 g/l FeCl3 x 6 H2O 0.019802 g/l Na2B4O7 x 10 H2O 0.00445545 g/l MnCl2 x 4 H2O 0.00178218 g/l ZnSO4 x 7 H2O 0.000217822 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Na2MoO4 x 2 H2O 2.9703e-05 g/l VOSO4 x 2 H2O 2.9703e-05 g/l CoSO4 x 7 H2O 9.90099e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6596positivegrowth75thermophilic
67770positivegrowth75thermophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6596hot springsKyushu Island (continental acidic geothermal area), Beppu Hot SpringsJapanJPNAsia
67770Beppu hot springsJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 6596
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfurisphaera tokodaii str. 7GCA_000011205completencbi273063
66792Sulfurisphaera tokodaii 7638154519completeimg273063

GC content

  • @ref: 6596
  • GC-content: 32.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno78.664no
flagellatedno96.71no
gram-positiveno94.531no
anaerobicyes81.913no
halophileno81.471no
spore-formingno95.921no
thermophileyes100yes
glucose-utilyes84.554no
aerobicno81.905no
glucose-fermentno80.007no

External links

@ref: 6596

culture collection no.: DSM 16993, JCM 10545, NBRC 100140, BCRC AR10039

straininfo link

  • @ref: 85677
  • straininfo: 100984

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11878560Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the genus Sulfolobus isolated from Beppu Hot Springs, Japan.Suzuki T, Iwasaki T, Uzawa T, Hara K, Nemoto N, Kon T, Ueki T, Yamagishi A, Oshima TExtremophiles10.1007/s0079201002212002Aerobiosis, DNA, Ribosomal/genetics, Genes, Bacterial, Hot Temperature, Japan, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sulfolobus/*classification/genetics/growth & development/isolation & purification, *Water MicrobiologyStress
Phylogeny29671720Sulfurisphaera javensis sp. nov., a hyperthermophilic and acidophilic archaeon isolated from Indonesian hot spring, and reclassification of Sulfolobus tokodaii Suzuki et al. 2002 as Sulfurisphaera tokodaii comb. nov.Tsuboi K, Sakai HD, Nur N, Stedman KM, Kurosawa N, Suwanto AInt J Syst Evol Microbiol10.1099/ijsem.0.0027652018Base Composition, Chemoautotrophic Growth, DNA, Archaeal/genetics, Hot Springs/*microbiology, Indonesia, Lipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfolobaceae/*classification/genetics/isolation & purification, SulfolobusTranscriptome

Reference

@idauthorscataloguedoi/urltitle
6596Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16993)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16993
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85677Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100984.1StrainInfo: A central database for resolving microbial strain identifiers