Strain identifier

BacDive ID: 166522

Type strain: Yes

Species: Jannaschia formosa

Strain Designation: 12N15

NCBI tax ID(s): 2259592 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67960

BacDive-ID: 166522

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Jannaschia formosa 12N15 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from marine solar saltern sediment.

NCBI tax id

  • NCBI tax id: 2259592
  • Matching level: species

doi: 10.13145/bacdive166522.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Jannaschia
  • species: Jannaschia formosa
  • full scientific name: Jannaschia formosa Zhang et al. 2019

@ref: 67960

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Jannaschia

species: Jannaschia formosa

strain designation: 12N15

type strain: yes

Morphology

cell morphology

  • @ref: 67960
  • gram stain: negative
  • cell length: 1.0-2.0 µm
  • cell width: 0.6-0.9 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 67960
  • colony size: 1 mm
  • colony color: blush-red
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Marine agar (MA)

pigmentation

@refproductionname
67960yesCarotenoid pigment
67960yesbacteriochlorophyll alpha

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67960positivegrowth10-40
67960positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
67960positivegrowth6.0-9.5alkaliphile
67960positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 67960
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
67960NaClpositivegrowth1.0-12.0 %
67960NaClpositiveoptimum2.0-5.0 %

observation

@refobservation
67960The predominant respiratory quinone is menaquinone (Q-10)
67960The polar lipids profile include phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminolipid, phosphatidylcholine, one lipid and three phospholipids

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6796017632nitrate-reduction
6796017632nitrate-anaerobic growth
6796058187alginate+hydrolysis
6796053424tween 20+hydrolysis
6796053423tween 40+hydrolysis
6796053425tween 60+hydrolysis
6796053426tween 80-hydrolysis
6796085146carboxymethylcellulose-hydrolysis
6796028017starch-hydrolysis
67960casein-hydrolysis
6796031605ferric citrate+assimilation
6796015361pyruvate+assimilation
6796016024D-mannose+assimilation
6796017634D-glucose+assimilation
6796030849L-arabinose+assimilation
6796016899D-mannitol+assimilation
6796059640N-acetylglucosamine-assimilation
6796017306maltose+assimilation
6796032032potassium gluconate+assimilation
6796027689decanoate-assimilation
6796017128adipate-assimilation
6796025115malate-assimilation
6796053258sodium citrate-assimilation
6796018401phenylacetate-assimilation
67960esculin ferric citrate-builds acid from
6796065327D-xylose+builds acid from
6796016988D-ribose+builds acid from
67960potassium 5-dehydro-D-gluconate+builds acid from
6796030849L-arabinose+builds acid from
6796016443D-tagatose-builds acid from
6796017634D-glucose-builds acid from
6796017306maltose-builds acid from
67960potassium 2-dehydro-D-gluconate-builds acid from
6796027082trehalose+builds acid from
6796032528turanose-builds acid from
6796012936D-galactose-builds acid from
6796015824D-fructose-builds acid from
6796017992sucrose+builds acid from
6796017057cellobiose+builds acid from
6796028053melibiose+builds acid from
6796018305arbutin-builds acid from
6796016024D-mannose-builds acid from
6796017814salicin-builds acid from
6796017716lactose-builds acid from
6796016899D-mannitol-builds acid from
6796028087glycogen-builds acid from
6796028017starch-builds acid from
6796017108D-arabinose-builds acid from
679606731melezitose-builds acid from
6796018287L-fucose+builds acid from
6796062345L-rhamnose-builds acid from
6796028066gentiobiose-builds acid from
6796017924D-sorbitol-builds acid from
6796018333D-arabitol-builds acid from
6796062318D-lyxose-builds acid from
6796028847D-fucose+builds acid from
6796017754glycerol-builds acid from
6796059640N-acetylglucosamine-builds acid from
67960320061methyl alpha-D-glucopyranoside-builds acid from
6796017268myo-inositol-builds acid from
6796032032potassium gluconate-builds acid from
6796074863methyl beta-D-xylopyranoside-builds acid from
6796016634raffinose-builds acid from
6796027613amygdalin-builds acid from
6796043943methyl alpha-D-mannoside-builds acid from
6796017113erythritol-builds acid from
6796065328L-xylose-builds acid from
6796015963ribitol-builds acid from
6796017266L-sorbose-builds acid from
6796016813galactitol-builds acid from
6796015443inulin-builds acid from
6796017151xylitol-builds acid from
6796018403L-arabitol-builds acid from
67960167632-oxobutanoate-carbon source
6796013705acetoacetate-carbon source
6796032323glucuronamide-carbon source
6796053423tween 40-carbon source
6796017306maltose+carbon source
6796016551D-trehalose-carbon source
6796017057cellobiose-carbon source
6796028066gentiobiose-carbon source
6796017992sucrose-carbon source
6796032528turanose-carbon source
6796017164stachyose-carbon source
6796016634raffinose-carbon source
6796036219alpha-lactose-carbon source
6796028053melibiose-carbon source
67960320055methyl beta-D-glucopyranoside-carbon source
6796017814salicin-carbon source
6796059640N-acetylglucosamine-carbon source
6796063153N-acetyl-D-mannosamine-carbon source
6796028800N-acetylgalactosamine-carbon source
6796035418n-acetylneuraminate-carbon source
6796017925alpha-D-glucose+carbon source
6796016024D-mannose+carbon source
6796015824D-fructose+carbon source
6796012936D-galactose+carbon source
67960739183-O-methyl-D-glucose-carbon source
6796028847D-fucose-carbon source
6796018287L-fucose-carbon source
6796062345L-rhamnose-carbon source
6796017596inosine-carbon source
6796017924D-sorbitol+carbon source
6796016899D-mannitol+carbon source
6796018333D-arabitol+carbon source
6796017268myo-inositol-carbon source
6796017754glycerol-carbon source
6796014314D-glucose 6-phosphate-carbon source
6796078697D-fructose 6-phosphate-carbon source
6796029990D-aspartate-carbon source
6796016523D-serine-carbon source
679605291gelatin-carbon source
6796070744glycine-proline-carbon source
6796016977L-alanine-carbon source
6796016467L-arginine-carbon source
6796029991L-aspartate-carbon source
6796029988L-glutamate-carbon source
6796015971L-histidine-carbon source
6796057606L-pyroglutamate-carbon source
6796017115L-serine-carbon source
6796017309pectin-carbon source
6796018024D-galacturonic acid-carbon source
6796017464L-galactonic acid gamma-lactone-carbon source
679608391D-gluconate-carbon source
6796015748D-glucuronate-carbon source
6796016537galactarate-carbon source
6796026490quinate-carbon source
6796030612D-glucarate-carbon source
67960181014-hydroxyphenylacetic acid-carbon source
6796051850methyl pyruvate-carbon source
6796074611methyl (R)-lactate-carbon source
6796016651(S)-lactate-carbon source
6796016947citrate-carbon source
67960168102-oxoglutarate-carbon source
6796030796(R)-malic acid-carbon source
6796030797(S)-malic acid-carbon source
6796073706bromosuccinate-carbon source
6796016865gamma-aminobutyric acid-carbon source
67960645522-hydroxybutyrate-carbon source
67960370543-hydroxybutyrate-carbon source
6796017272propionate-carbon source
6796016411acetic acid-carbon source
6796015740formate-carbon source

metabolite production

@refChebi-IDmetaboliteproduction
6796016136hydrogen sulfideno
6796035581indoleno

enzymes

@refvalueactivityec
67960catalase+1.11.1.6
67960cytochrome oxidase+1.9.3.1
67960alkaline phosphatase+3.1.3.1
67960esterase (C 4)+
67960esterase Lipase (C 8)+
67960leucine arylamidase+3.4.11.1
67960acid phosphatase+3.1.3.2
67960naphthol-AS-BI-phosphohydrolase+
67960alpha-galactosidase+3.2.1.22
67960beta-galactosidase+3.2.1.23
67960alpha-mannosidase+3.2.1.24
67960lipase (C 14)-
67960valine arylamidase-
67960trypsin-3.4.21.4
67960chymotrypsin-3.4.4.5
67960beta-glucuronidase-3.2.1.31
67960alpha-glucosidase-3.2.1.20
67960beta-glucosidase-3.2.1.21
67960N-acetyl-beta-glucosaminidase-3.2.1.52
67960beta-D-fucosidase-3.2.1.38

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    67960C16:01.9
    67960C18:010.9
    67960C18:1 w7c70.5
    67960C10:0 3OH1.8
    67960C18:1 w7c 11-Methyl4.7
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 2
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 67960
  • sample type: marine solar saltern sediment
  • sampling date: 2017-10
  • geographic location: Wendeng
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 36.999
  • longitude: 122.027

Sequence information

16S sequences

  • @ref: 67960
  • description: Jannaschia formosa 16S ribosomal RNA gene, partial sequence
  • accession: MG757438
  • length: 1409
  • database: ena
  • NCBI tax ID: 2259592

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jannaschia formosa 12N152835214827draftimg2259592
67960Jannaschia formosa 12N15GCA_003340555contigncbi2259592

GC content

  • @ref: 67960
  • GC-content: 69.6
  • method: genome sequence analysis

External links

@ref: 67960

culture collection no.: MCCC 1H00325, KCTC 62582

literature

  • topic: Phylogeny
  • Pubmed-ID: 31066657
  • title: Jannaschia formosa sp. nov., isolated from marine saltern sediment.
  • authors: Zhang R, Wang C, Wang XT, Mu DS, Du ZJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003424
  • year: 2019
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, *Salinity, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67960Rui Zhang, Chong Wang, Xu-Ting Wang, Da-Shuai Mu, Zong-Jun DuJannaschia formosa sp. nov., isolated from marine saltern sediment10.1099/ijsem.0.003424IJSEM 69: 2037-2042 2019