Strain identifier

BacDive ID: 1664

Type strain: No

Species: Beijerinckia indica

Strain history: <- J. De Ley <- NCIB <- A.G. Lochhead

NCBI tax ID(s): 533 (species)

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General

@ref: 370

BacDive-ID: 1664

DSM-Number: 724

keywords: 16S sequence, Bacteria, mesophilic

description: Beijerinckia indica DSM 724 is a mesophilic bacterium of the family Beijerinckiaceae.

NCBI tax id

  • NCBI tax id: 533
  • Matching level: species

strain history

  • @ref: 370
  • history: <- J. De Ley <- NCIB <- A.G. Lochhead

doi: 10.13145/bacdive1664.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Beijerinckiaceae
  • genus: Beijerinckia
  • species: Beijerinckia indica
  • full scientific name: Beijerinckia indica (Starkey and De 1939) Derx 1950 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Azotobacter indicum

@ref: 370

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Beijerinckiaceae

genus: Beijerinckia

species: Beijerinckia indica

full scientific name: Beijerinckia indica (Starkey and De 1939) Derx 1950

type strain: no

Culture and growth conditions

culture medium

  • @ref: 370
  • name: BEIJERINCKIA MEDIUM (DSMZ Medium 111)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/111
  • composition: Name: BEIJERINCKIA MEDIUM (DSMZ Medium 111) Composition: Agar 15.7895 g/l Glucose 10.5263 g/l K2HPO4 0.842105 g/l KH2PO4 0.210526 g/l MgSO4 x 7 H2O 0.105263 g/l FeSO4 x 7 H2O 0.0210526 g/l ZnSO4 x 6 H2O 0.00526316 g/l Na2MoO4 x 2 H2O 0.00526316 g/l CuSO4 x 6 H2O 0.00421053 g/l MnSO4 x 6 H2O 0.00210526 g/l Distilled water

culture temp

  • @ref: 370
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_4233.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_841;97_2572;98_3189;99_4233&stattab=map
  • Last taxonomy: Beijerinckia
  • 16S sequence: AB680127
  • Sequence Identity:
  • Total samples: 223
  • soil counts: 101
  • aquatic counts: 99
  • animal counts: 14
  • plant counts: 9

Safety information

risk assessment

  • @ref: 370
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Beijerinckia indica subsp. indica gene for 16S rRNA, partial sequence, strain: NBRC 3744
  • accession: AB680127
  • length: 1412
  • database: ena
  • NCBI tax ID: 31994

External links

@ref: 370

culture collection no.: DSM 724, ATCC 9037, IFO 3744, NBRC 3744, NCIB 8597

straininfo link

  • @ref: 71311
  • straininfo: 1223

literature

  • topic: Metabolism
  • Pubmed-ID: 32752982
  • title: Crystal structure of a glycoside hydrolase family 68 beta-fructosyltransferase from Beijerinckia indica subsp. indica in complex with fructose.
  • authors: Tonozuka T, Kitamura J, Nagaya M, Kawai R, Nishikawa A, Hirano K, Tamura K, Fujii T, Tochio T
  • journal: Biosci Biotechnol Biochem
  • DOI: 10.1080/09168451.2020.1804317
  • year: 2020
  • mesh: Amino Acid Sequence, Beijerinckiaceae/*enzymology, Crystallography, X-Ray, Fructose/*metabolism, Glycoside Hydrolases/*chemistry/genetics/*metabolism, Models, Molecular, Mutagenesis, Protein Conformation, Structure-Activity Relationship
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
370Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 724)https://www.dsmz.de/collection/catalogue/details/culture/DSM-724
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71311Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1223.1StrainInfo: A central database for resolving microbial strain identifiers